Variant report

Variant	rs566449583
Chromosome Location	chr13:111282198-111282199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:111280796..111283636-chr13:111367642..111369332,2	K562	blood:
2	chr13:111266314..111268979-chr13:111280505..111282766,2	K562	blood:
3	chr13:111281708..111283812-chr13:111291061..111293411,2	K562	blood:
4	chr13:111282173..111283948-chr13:111364006..111365721,2	K562	blood:
5	chr13:111280819..111283163-chr13:111298869..111301563,3	K562	blood:

Variant related genes	Relation type
ENSG00000134905	Chromatin interaction
ENSG00000213995	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000255831	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv832720	chr13:111100235-111295993	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1044234	chr13:111143053-111370580	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
4	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
5	nsv901010	chr13:111165390-111286592	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1053922	chr13:111167764-111330876	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1043849	chr13:111167764-111340418	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv541924	chr13:111167764-111340418	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1036160	chr13:111167764-111347308	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv541925	chr13:111167764-111347308	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv901012	chr13:111220842-111340342	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
13	nsv563123	chr13:111237260-111292044	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv563124	chr13:111261267-111300943	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
15	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
16	nsv456120	chr13:111280002-111309617	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	n/a
17	nsv563125	chr13:111280002-111309617	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	n/a
18	nsv1042232	chr13:111282123-111348475	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111269000-111287000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:111269400-111286600	Weak transcription	Fetal Brain Male	brain
3	chr13:111269400-111287200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:111270400-111282800	Weak transcription	Fetal Kidney	kidney
5	chr13:111270800-111296800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:111271200-111287000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:111274400-111284400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr13:111274600-111282200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:111274600-111282200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:111274600-111282400	Strong transcription	NHLF	lung
11	chr13:111274600-111283600	Strong transcription	Thymus	Thymus
12	chr13:111274600-111284200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr13:111274600-111284200	Strong transcription	Adipose Nuclei	Adipose
14	chr13:111274600-111284200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr13:111274600-111284400	Strong transcription	Placenta	Placenta
16	chr13:111274600-111284400	Strong transcription	Dnd41	blood
17	chr13:111274600-111285000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr13:111274800-111284000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr13:111274800-111284200	Strong transcription	Primary T cells from cord blood	blood
20	chr13:111274800-111284400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:111274800-111284400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:111275600-111287400	Weak transcription	K562	blood
23	chr13:111276000-111286000	Weak transcription	HUVEC	blood vessel
24	chr13:111276000-111286200	Weak transcription	A549	lung
25	chr13:111277000-111282400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:111277000-111284200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:111277800-111283000	Weak transcription	Hela-S3	cervix
28	chr13:111277800-111284400	Strong transcription	Fetal Muscle Leg	muscle
29	chr13:111277800-111286800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr13:111278000-111286600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:111278000-111286600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr13:111278200-111283600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr13:111278200-111286800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr13:111278400-111284200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr13:111278400-111287200	Weak transcription	Small Intestine	intestine
36	chr13:111278600-111286800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:111278800-111285200	Strong transcription	Fetal Intestine Small	intestine
38	chr13:111279200-111284200	Strong transcription	Lung	lung
39	chr13:111279200-111285000	Strong transcription	Fetal Intestine Large	intestine
40	chr13:111279400-111282400	Strong transcription	Fetal Lung	lung
41	chr13:111279400-111283600	Strong transcription	HepG2	liver
42	chr13:111279400-111284600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr13:111279600-111284200	Strong transcription	Fetal Thymus	thymus
44	chr13:111279600-111284800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr13:111279600-111286800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr13:111279600-111286800	Weak transcription	Stomach Mucosa	stomach
47	chr13:111279800-111282400	Strong transcription	Colonic Mucosa	Colon
48	chr13:111279800-111282400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
49	chr13:111279800-111283600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr13:111279800-111283600	Genic enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links