Variant report

Variant	rs566467620
Chromosome Location	chr9:86241813-86241814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86241062..86243617-chr9:86248330..86250163,2	K562	blood:
2	chr9:86236280..86241962-chr9:86320992..86325340,9	MCF-7	breast:
3	chr9:86238599..86242233-chr9:86242446..86245459,4	K562	blood:
4	chr9:86236616..86242493-chr9:86533666..86537484,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254473	Chromatin interaction
ENSG00000135018	Chromatin interaction
ENSG00000165115	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv973848	chr9:86241130-86260149	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86238600-86265000	Weak transcription	Ovary	ovary
2	chr9:86238800-86242200	Weak transcription	Gastric	stomach
3	chr9:86238800-86242800	Weak transcription	Esophagus	oesophagus
4	chr9:86238800-86243000	Weak transcription	Lung	lung
5	chr9:86238800-86243600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:86238800-86244400	Weak transcription	Aorta	Aorta
7	chr9:86238800-86246000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:86238800-86246000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:86238800-86254600	Weak transcription	Left Ventricle	heart
10	chr9:86238800-86260600	Weak transcription	Right Ventricle	heart
11	chr9:86238800-86264600	Weak transcription	Psoas Muscle	Psoas
12	chr9:86239000-86242200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:86239000-86244200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:86239000-86244200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:86239000-86244400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:86239000-86244400	Weak transcription	HSMM	muscle
17	chr9:86239000-86244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:86239000-86244600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:86239000-86245200	Weak transcription	Fetal Kidney	kidney
20	chr9:86239000-86245400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:86239000-86250000	Weak transcription	HSMMtube	muscle
22	chr9:86239000-86264800	Weak transcription	HMEC	breast
23	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:86239200-86242000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr9:86239200-86242200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:86239200-86243000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:86239200-86243800	Weak transcription	A549	lung
28	chr9:86239200-86243800	Weak transcription	Osteobl	bone
29	chr9:86239200-86244000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:86239200-86244000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:86239200-86244000	Weak transcription	NHLF	lung
32	chr9:86239200-86244200	Weak transcription	Colonic Mucosa	Colon
33	chr9:86239200-86244400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:86239200-86244800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:86239200-86245800	Weak transcription	Brain Germinal Matrix	brain
36	chr9:86239200-86261000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:86239400-86242200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr9:86239400-86242200	Weak transcription	Primary B cells from cord blood	blood
39	chr9:86239400-86243800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr9:86239400-86244000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr9:86239400-86244600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:86239400-86245400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:86239400-86245800	Weak transcription	Fetal Heart	heart
44	chr9:86239400-86245800	Weak transcription	Fetal Lung	lung
45	chr9:86239400-86248000	Weak transcription	NHDF-Ad	bronchial
46	chr9:86239400-86254400	Weak transcription	Brain Anterior Caudate	brain
47	chr9:86239400-86254400	Weak transcription	Brain Substantia Nigra	brain
48	chr9:86239400-86266200	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:86239400-86266400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:86239600-86242200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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