The 2.0 version of rSNPBase

Variant report

Variant rs566496127
Chromosome Location chr2:30811413-30811414
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:30749000-30812600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr2:30758600-30853800 Weak transcription Thymus Thymus
3 chr2:30774800-30812000 Weak transcription Fetal Lung lung
4 chr2:30777000-30815800 Weak transcription Fetal Intestine Small intestine
5 chr2:30783400-30819800 Weak transcription Stomach Smooth Muscle stomach
6 chr2:30784000-30812200 Weak transcription NH-A brain
7 chr2:30785200-30826600 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr2:30785400-30818800 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr2:30786600-30818200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr2:30786600-30822400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr2:30786800-30818200 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr2:30789000-30816600 Weak transcription Esophagus oesophagus
13 chr2:30789200-30818800 Weak transcription Fetal Intestine Large intestine
14 chr2:30790400-30811600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr2:30790800-30812200 Weak transcription Right Ventricle heart
16 chr2:30792600-30863000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr2:30792800-30818400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr2:30792800-30818800 Weak transcription Fetal Kidney kidney
19 chr2:30792800-30851400 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr2:30793000-30811800 Weak transcription NHDF-Ad bronchial
21 chr2:30796600-30827000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr2:30798000-30814200 Weak transcription Fetal Thymus thymus
23 chr2:30798000-30827600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr2:30798400-30839600 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr2:30799400-30812400 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr2:30805800-30812000 Weak transcription Muscle Satellite Cultured Cells --
27 chr2:30807400-30811800 Weak transcription Osteobl bone
28 chr2:30807400-30812200 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr2:30807400-30831200 Weak transcription K562 blood
30 chr2:30807600-30818200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr2:30807800-30822800 Weak transcription Primary hematopoietic stem cells blood
32 chr2:30808000-30817400 Weak transcription GM12878-XiMat blood
33 chr2:30808200-30844600 Weak transcription Duodenum Mucosa Duodenum
34 chr2:30808400-30812000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr2:30808400-30818600 Weak transcription Gastric stomach
36 chr2:30809800-30816600 Weak transcription Primary T cells fromperipheralblood blood
37 chr2:30809800-30822200 Weak transcription Primary T cells from cord blood blood
38 chr2:30810200-30811800 Weak transcription Fetal Heart heart
39 chr2:30810200-30818200 Weak transcription Primary B cells from cord blood blood
40 chr2:30810800-30811600 Strong transcription Primary hematopoietic stem cells short term culture blood
41 chr2:30810800-30811800 Enhancers Left Ventricle heart
42 chr2:30810800-30812600 Enhancers Skeletal Muscle Male skeletal muscle
43 chr2:30811000-30811600 Enhancers Ovary ovary
44 chr2:30811200-30821200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr2:30811200-30821600 Weak transcription Primary B cells from peripheral blood blood
46 chr2:30811400-30824800 Weak transcription Aorta Aorta
47 chr2:30811400-30834400 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015