Variant report

Variant	rs566499530
Chromosome Location	chr10:50294376-50294377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50287416..50289075-chr10:50291865..50294530,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv522731	chr10:50293456-50294670	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
2	chr10:50289200-50294400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:50289600-50298800	Weak transcription	Fetal Thymus	thymus
4	chr10:50290200-50298200	Weak transcription	Colonic Mucosa	Colon
5	chr10:50290400-50295000	Weak transcription	K562	blood
6	chr10:50290800-50315400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:50291200-50297200	Weak transcription	Lung	lung
8	chr10:50291800-50299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:50292200-50294400	Weak transcription	Brain Angular Gyrus	brain
10	chr10:50292200-50294400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:50292200-50296400	Weak transcription	Right Atrium	heart
12	chr10:50292200-50296600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:50292200-50302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:50292200-50311800	Weak transcription	Aorta	Aorta
15	chr10:50293000-50294400	Weak transcription	Fetal Lung	lung
16	chr10:50293200-50294400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:50293200-50296400	Weak transcription	Right Ventricle	heart
18	chr10:50293200-50297000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:50293400-50294400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:50293400-50294400	Weak transcription	Fetal Intestine Large	intestine
21	chr10:50293400-50294400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:50293400-50296600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:50293400-50296600	Weak transcription	Fetal Stomach	stomach
24	chr10:50293400-50296800	Weak transcription	Ovary	ovary
25	chr10:50293400-50312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:50294000-50294400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:50294000-50294600	Strong transcription	Left Ventricle	heart
28	chr10:50294200-50294600	ZNF genes & repeats	HSMMtube	muscle
29	chr10:50294200-50294800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr10:50294200-50295600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:50294200-50295800	ZNF genes & repeats	Fetal Muscle Leg	muscle

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