Variant report

Variant	rs56655039
Chromosome Location	chr5:113528721-113528722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10519377	0.87[ASN][1000 genomes]
rs12187531	0.83[ASN][1000 genomes]
rs13154555	0.88[ASN][1000 genomes]
rs13159883	0.80[ASN][1000 genomes]
rs13161120	0.92[ASN][1000 genomes]
rs13174507	0.84[AFR][1000 genomes]
rs13180969	0.93[ASN][1000 genomes]
rs13187726	0.89[ASN][1000 genomes]
rs35425232	0.83[ASN][1000 genomes]
rs4705492	0.93[ASN][1000 genomes]
rs4705635	0.92[ASN][1000 genomes]
rs4705644	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2763899	chr5:113474771-113533857	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113527200-113529200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:113527200-113529200	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links