Variant report

Variant	rs566560391
Chromosome Location	chr16:12424151-12424152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12415388..12417131-chr16:12421455..12424382,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv833141	chr16:12314613-12487992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457411	chr16:12363304-12520199	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv571462	chr16:12363304-12520199	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1045385	chr16:12376389-12517006	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542748	chr16:12376389-12517006	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv905349	chr16:12408750-12445863	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv827555	chr16:12413244-12429978	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv571464	chr16:12423557-12449778	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12371400-12456800	Weak transcription	Aorta	Aorta
2	chr16:12404200-12427400	Weak transcription	Primary T cells from cord blood	blood
3	chr16:12405600-12426400	Weak transcription	Lung	lung
4	chr16:12405600-12442400	Weak transcription	Spleen	Spleen
5	chr16:12410000-12456600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr16:12410200-12424400	Weak transcription	Right Atrium	heart
7	chr16:12410200-12464800	Weak transcription	Gastric	stomach
8	chr16:12414400-12431400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:12414800-12432000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr16:12415000-12424600	Weak transcription	Esophagus	oesophagus
11	chr16:12415000-12431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr16:12415400-12435400	Weak transcription	Pancreas	Pancrea
13	chr16:12415600-12425200	Weak transcription	Primary B cells from cord blood	blood
14	chr16:12416200-12427600	Weak transcription	Thymus	Thymus
15	chr16:12416800-12438600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr16:12417800-12424200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr16:12418400-12426400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:12418400-12433400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr16:12418400-12433400	Weak transcription	Brain Substantia Nigra	brain
20	chr16:12418400-12438400	Weak transcription	Brain Anterior Caudate	brain
21	chr16:12418600-12424600	Weak transcription	Psoas Muscle	Psoas
22	chr16:12421600-12428400	Enhancers	Stomach Smooth Muscle	stomach
23	chr16:12421800-12425400	Enhancers	Colon Smooth Muscle	Colon
24	chr16:12422000-12432200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr16:12422400-12424400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr16:12422400-12424400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr16:12422600-12425400	Enhancers	GM12878-XiMat	blood
28	chr16:12422800-12424600	Weak transcription	Adipose Nuclei	Adipose
29	chr16:12422800-12424800	Weak transcription	Liver	Liver
30	chr16:12423000-12424400	Weak transcription	Fetal Stomach	stomach
31	chr16:12423000-12425000	Enhancers	Left Ventricle	heart
32	chr16:12423000-12425000	Enhancers	Right Ventricle	heart
33	chr16:12423000-12425600	Enhancers	Fetal Heart	heart
34	chr16:12423000-12426800	Enhancers	Fetal Muscle Leg	muscle
35	chr16:12423200-12424600	Weak transcription	Ovary	ovary
36	chr16:12423200-12425400	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr16:12423600-12425400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr16:12423600-12425400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr16:12423800-12424400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr16:12423800-12425000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr16:12423800-12426000	Weak transcription	Fetal Brain Female	brain
42	chr16:12423800-12433600	Weak transcription	HSMMtube	muscle
43	chr16:12424000-12424400	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr16:12424000-12426800	Enhancers	Fetal Muscle Trunk	muscle

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