The 2.0 version of rSNPBase

Variant report

Variant rs566562398
Chromosome Location chr22:31291411-31291412
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:31265200-31299400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr22:31266400-31295200 Weak transcription Stomach Smooth Muscle stomach
3 chr22:31274200-31308400 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr22:31277800-31295200 Weak transcription Fetal Brain Male brain
5 chr22:31278400-31291800 Weak transcription HMEC breast
6 chr22:31278400-31292600 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr22:31278400-31301600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr22:31278600-31321400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr22:31278800-31295000 Weak transcription Small Intestine intestine
10 chr22:31278800-31301600 Weak transcription A549 lung
11 chr22:31282200-31294400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr22:31282800-31294200 Weak transcription Rectal Smooth Muscle rectum
13 chr22:31283000-31306600 Weak transcription Fetal Heart heart
14 chr22:31283400-31291600 Strong transcription Brain Anterior Caudate brain
15 chr22:31283400-31304000 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr22:31283600-31292800 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr22:31283600-31318400 Weak transcription Placenta Amnion Placenta Amnion
18 chr22:31284200-31291800 Strong transcription NHEK skin
19 chr22:31284400-31308400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr22:31284600-31293000 Strong transcription Fetal Lung lung
21 chr22:31284600-31295200 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr22:31284800-31306600 Weak transcription Colonic Mucosa Colon
23 chr22:31285200-31295000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr22:31286200-31294000 Weak transcription HepG2 liver
25 chr22:31286200-31294200 Weak transcription Aorta Aorta
26 chr22:31286400-31294400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr22:31286400-31299200 Weak transcription Liver Liver
28 chr22:31286400-31304000 Weak transcription Ovary ovary
29 chr22:31287200-31291600 Strong transcription Fetal Intestine Large intestine
30 chr22:31287200-31294200 Strong transcription Fetal Intestine Small intestine
31 chr22:31287200-31299200 Weak transcription Esophagus oesophagus
32 chr22:31287400-31300400 Weak transcription Muscle Satellite Cultured Cells --
33 chr22:31287800-31295000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr22:31288400-31316400 Weak transcription Thymus Thymus
35 chr22:31288600-31293800 Strong transcription Hela-S3 cervix
36 chr22:31289200-31294400 Weak transcription HSMM muscle
37 chr22:31289400-31298600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr22:31289600-31294400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr22:31290000-31294400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr22:31290000-31294600 Weak transcription Lung lung
41 chr22:31290000-31294800 Weak transcription Spleen Spleen
42 chr22:31290000-31295200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr22:31290000-31305200 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr22:31290000-31305200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr22:31290200-31294200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr22:31290200-31294400 Weak transcription Fetal Stomach stomach
47 chr22:31290200-31294600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr22:31290200-31295200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr22:31290200-31298200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr22:31290200-31298600 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015