Variant report

Variant	rs56656371
Chromosome Location	chr2:39887691-39887692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10187157	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17024111	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17024114	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17024117	1.00[EUR][1000 genomes]
rs58032747	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58640385	1.00[AMR][1000 genomes]
rs72934275	1.00[EUR][1000 genomes]
rs72934277	1.00[EUR][1000 genomes]
rs7606706	1.00[EUR][1000 genomes]
rs7606718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39885600-39893600	Weak transcription	Fetal Brain Male	brain
2	chr2:39886400-39888200	Weak transcription	Fetal Brain Female	brain
3	chr2:39887200-39889400	Enhancers	HSMM	muscle
4	chr2:39887200-39890000	Enhancers	HSMMtube	muscle
5	chr2:39887600-39888000	Enhancers	NHEK	skin
6	chr2:39887600-39888600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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