Variant report

Variant	rs566564398
Chromosome Location	chr1:160470413-160470414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160461200-160472600	Weak transcription	Thymus	Thymus
2	chr1:160466000-160470600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:160466200-160473000	Weak transcription	Fetal Thymus	thymus
4	chr1:160466200-160474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:160466600-160471400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:160466600-160471600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:160466600-160471800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:160467000-160471600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:160468000-160477000	ZNF genes & repeats	GM12878-XiMat	blood
10	chr1:160468600-160471800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr1:160468800-160473000	Strong transcription	Primary T cells from cord blood	blood
12	chr1:160469200-160472600	Strong transcription	Primary B cells from cord blood	blood
13	chr1:160469400-160470800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:160469800-160470800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:160469800-160471200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:160469800-160472400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:160470000-160470800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:160470000-160470800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr1:160470000-160471200	Enhancers	Placenta	Placenta
20	chr1:160470200-160472600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:160470400-160471200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:160470400-160471600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr1:160470400-160471800	Weak transcription	Primary monocytes fromperipheralblood	blood

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