Variant report

Variant	rs566577164
Chromosome Location	chr5:177103123-177103124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:177103100-177103150	HUVEC	blood vessel:	n/a
2	chr5:177103100-177103150	HEEpiC	esophagus:	n/a
3	chr5:177103100-177103150	K562	blood:	n/a
4	chr5:177103100-177103150	CMK	blood:	n/a
5	chr5:177103100-177103150	NB4	blood:	n/a
6	chr5:177103100-177103150	Jurkat	blood:	n/a
7	chr5:177103100-177103150	GM12878	blood:	n/a
8	chr5:177103100-177103150	GM12892	blood:	n/a
9	chr5:177103100-177103150	SK-N-MC	brain:	n/a
10	chr5:177103100-177103150	ProgFib	skin:	n/a
11	chr5:177103100-177103150	HEK293	kidney:	embryo
12	chr5:177103100-177103150	NT2-D1	testis:	n/a
13	chr5:177103100-177103150	BE2_C	brain:	n/a
14	chr5:177103100-177103150	HepG2	liver:	n/a
15	chr5:177103100-177103150	HNPCEpiC	eye:	n/a
16	chr5:177103100-177103150	NHDF-neo	bronchial:	n/a
17	chr5:177103100-177103150	HAEpiC	amniotic membrane:	n/a
18	chr5:177103100-177103150	AG10803	skin:	n/a
19	chr5:177103100-177103150	HRCEpiC	kidney:	n/a
20	chr5:177103100-177103150	NH-A	brain:	n/a
21	chr5:177103100-177103150	HIPEpiC	eye:	n/a
22	chr5:177103100-177103150	GM19239	blood:	n/a
23	chr5:177103100-177103150	Hepatocyte	liver:	n/a
24	chr5:177103100-177103150	PrEC	prostate:	n/a
25	chr5:177103100-177103150	GM06990	blood:	n/a
26	chr5:177103100-177103150	HRE	kidney:	n/a
27	chr5:177103100-177103150	BJ	skin:	n/a
28	chr5:177103100-177103150	SKMC	muscle:	n/a
29	chr5:177103100-177103150	AG04449	skin:	fetal
30	chr5:177103100-177103150	HCT-116	colon:	n/a
31	chr5:177103100-177103150	SK-N-SH_RA	brain:	n/a
32	chr5:177103100-177103150	MCF-7	breast:	n/a
33	chr5:177103100-177103150	MCF10A-Er-Src	breast:	n/a
34	chr5:177103100-177103150	AG09309	skin:	n/a
35	chr5:177103100-177103150	NHBE	bronchial:	n/a
36	chr5:177103100-177103150	HCPEpiC	choroid plexus:	n/a
37	chr5:177103100-177103150	SK-N-SH	brain:	n/a
38	chr5:177103100-177103150	A549	lung:	n/a
39	chr5:177103100-177103150	Caco-2	colon:	n/a
40	chr5:177103100-177103150	HL-60	blood:	n/a
41	chr5:177103100-177103150	H1-hESC	embryonic stem cell:	embryo
42	chr5:177103100-177103150	ECC-1	luminal epithelium:	n/a
43	chr5:177103100-177103150	HMEC	breast:	n/a
44	chr5:177103100-177103150	GM12891	blood:	n/a
45	chr5:177103100-177103150	ovcar-3	ovarian:	n/a
46	chr5:177103100-177103150	U87	brain:	n/a
47	chr5:177103100-177103150	HCM	heart:	n/a
48	chr5:177103100-177103150	HRPEpiC	eye:	n/a
49	chr5:177103100-177103150	RPTEC	kidney:	n/a
50	chr5:177103100-177103150	AG04450	lung:	fetal

No data

Variant related genes	Relation type
ENSG00000246596	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3385471	chr5:177098196-177106694	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
6	esv3518846	chr5:177099446-177106844	Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv3518847	chr5:177099446-177106844	Active TSS Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
8	esv2762570	chr5:177101771-177138875	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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