Variant report

Variant	rs566589762
Chromosome Location	chr7:50541153-50541154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347651	chr7:50541003-50541448	Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50535800-50546800	Weak transcription	Pancreas	Pancrea
2	chr7:50535800-50553200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:50536000-50542800	Weak transcription	Colonic Mucosa	Colon
4	chr7:50536200-50541400	Weak transcription	HepG2	liver
5	chr7:50536200-50542200	Strong transcription	Fetal Intestine Small	intestine
6	chr7:50536200-50545400	Weak transcription	Right Atrium	heart
7	chr7:50536400-50541400	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:50536400-50541600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:50536400-50541800	Strong transcription	Fetal Intestine Large	intestine
10	chr7:50536600-50543000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:50540600-50542800	Enhancers	Stomach Smooth Muscle	stomach
12	chr7:50540800-50542200	Enhancers	Psoas Muscle	Psoas
13	chr7:50540800-50543400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:50540800-50543400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr7:50540800-50543400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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