Variant report

Variant	rs566591407
Chromosome Location	chr1:179112093-179112094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179110656..179113275-chr1:179262488..179264481,2	K562	blood:

Variant related genes	Relation type
ENSG00000057252	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012667	chr1:179094571-179120280	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002253	chr1:179094571-179120938	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1001191	chr1:179097246-179120938	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1009493	chr1:179110523-179121079	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179087800-179113000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:179093400-179117200	Weak transcription	Fetal Stomach	stomach
3	chr1:179099200-179114800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:179099600-179116800	Weak transcription	Thymus	Thymus
5	chr1:179099600-179119400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:179099600-179122600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:179100000-179121000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:179100600-179117200	Weak transcription	Fetal Intestine Small	intestine
9	chr1:179107600-179119800	Weak transcription	Liver	Liver
10	chr1:179108200-179113200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:179109400-179112400	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr1:179109400-179112400	Active TSS	Psoas Muscle	Psoas
13	chr1:179109600-179112600	Active TSS	NHDF-Ad	bronchial
14	chr1:179109800-179112400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:179109800-179112400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr1:179109800-179112800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:179110000-179112200	Active TSS	HSMM	muscle
18	chr1:179110000-179112400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:179110000-179112400	Active TSS	Muscle Satellite Cultured Cells	--
20	chr1:179110000-179112400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:179110000-179112400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:179110000-179112600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:179110000-179112600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:179110000-179112600	Active TSS	HSMMtube	muscle
25	chr1:179110000-179112600	Active TSS	NH-A	brain
26	chr1:179110000-179112800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr1:179110000-179112800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:179110000-179118400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:179110200-179112400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:179110200-179112400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr1:179110200-179112400	Active TSS	NHLF	lung
32	chr1:179110200-179112600	Active TSS	HMEC	breast
33	chr1:179110200-179112600	Active TSS	Osteobl	bone
34	chr1:179110200-179112800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:179110200-179113000	Active TSS	HUVEC	blood vessel
36	chr1:179110200-179113200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr1:179110200-179116000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:179110200-179121400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:179110400-179112200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr1:179110400-179112200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr1:179110400-179112400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:179110400-179112400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr1:179110400-179112400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr1:179110400-179112400	Enhancers	K562	blood
45	chr1:179110400-179112600	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr1:179110400-179112800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:179110400-179113200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:179110600-179112200	Enhancers	Rectal Smooth Muscle	rectum
49	chr1:179110600-179112800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:179110600-179113800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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