Variant report

Variant	rs56661631
Chromosome Location	chr1:150587388-150587389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150543642..150545689-chr1:150586263..150588774,2	MCF-7	breast:
2	chr1:150575575..150579360-chr1:150586267..150590184,5	MCF-7	breast:
3	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
4	chr1:150540599..150543052-chr1:150586269..150588685,3	K562	blood:
5	chr1:150544693..150547632-chr1:150583989..150587707,3	MCF-7	breast:
6	chr1:150575574..150579805-chr1:150584520..150587966,8	K562	blood:
7	chr1:150583951..150586668-chr1:150586711..150588335,2	K562	blood:
8	chr1:150516867..150518904-chr1:150586096..150587673,2	K562	blood:
9	chr1:150532483..150534415-chr1:150583903..150587502,3	K562	blood:
10	chr1:150544073..150554289-chr1:150582699..150598712,61	K562	blood:

No data

Variant related genes	Relation type
ENSG00000264508	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000264584	Chromatin interaction
ENSG00000203804	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11204676	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150553200-150592000	Weak transcription	Fetal Kidney	kidney
2	chr1:150573400-150587800	Weak transcription	Brain Germinal Matrix	brain
3	chr1:150576200-150591000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:150577000-150588400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:150577400-150587800	Weak transcription	Esophagus	oesophagus
6	chr1:150578000-150592600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:150582200-150587800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:150582200-150588800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:150582400-150588800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:150582400-150594400	Weak transcription	Ovary	ovary
11	chr1:150582600-150591800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:150582800-150587800	Weak transcription	Fetal Brain Male	brain
13	chr1:150583000-150587600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:150583000-150588000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr1:150583200-150588000	Genic enhancers	Fetal Intestine Small	intestine
16	chr1:150583200-150589000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr1:150583400-150588200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr1:150583600-150588000	Enhancers	Liver	Liver
19	chr1:150584000-150588600	Strong transcription	Fetal Brain Female	brain
20	chr1:150584200-150587600	Weak transcription	Fetal Lung	lung
21	chr1:150584400-150588600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr1:150584400-150594800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:150584400-150600600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:150584600-150588200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:150584600-150589400	Weak transcription	Brain Anterior Caudate	brain
26	chr1:150584800-150587600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:150584800-150587600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:150584800-150587800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:150584800-150589600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr1:150584800-150591400	Weak transcription	Right Ventricle	heart
31	chr1:150584800-150591600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:150584800-150594400	Weak transcription	Gastric	stomach
33	chr1:150584800-150596200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:150584800-150600200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:150585000-150600000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr1:150585200-150600200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr1:150585400-150588000	Enhancers	Stomach Mucosa	stomach
38	chr1:150585400-150594200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr1:150585600-150588800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr1:150585600-150589200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr1:150585600-150589200	Enhancers	Small Intestine	intestine
42	chr1:150585600-150591600	Weak transcription	Psoas Muscle	Psoas
43	chr1:150585800-150588000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:150586000-150587600	Strong transcription	Fetal Thymus	thymus
45	chr1:150586000-150587800	Weak transcription	Thymus	Thymus
46	chr1:150586200-150587800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:150586200-150587800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr1:150586200-150589400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:150586200-150591800	Weak transcription	Colon Smooth Muscle	Colon
50	chr1:150586200-150594600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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