Variant report

Variant	rs56663234
Chromosome Location	chr14:69484070-69484071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1956248	0.85[AMR][1000 genomes]
rs55853731	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58296488	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58496782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58822066	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61255130	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72718237	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72718240	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72718241	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72718244	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72718245	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3396707	chr14:69483424-69485972	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3449205	chr14:69483749-69485647	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
2	chr14:69481000-69486000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69481200-69484800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:69481400-69484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:69481800-69484800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:69481800-69484800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:69481800-69484800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:69481800-69485000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:69482000-69484200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:69482000-69484600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:69482000-69484800	Weak transcription	HepG2	liver
12	chr14:69482000-69485200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:69482400-69485200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:69483200-69485600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:69483600-69484800	Weak transcription	K562	blood
16	chr14:69484000-69485200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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