Variant report

Variant	rs566670614
Chromosome Location	chr7:140353349-140353350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:140352705..140358390-chr7:140370477..140374283,7	MCF-7	breast:
2	chr7:140217094..140218389-chr7:140352924..140354007,12	K562	blood:
3	chr7:140217465..140218703-chr7:140352465..140353922,9	MCF-7	breast:
4	chr7:140347403..140349071-chr7:140352045..140353998,2	MCF-7	breast:
5	chr7:140216203..140218694-chr7:140353097..140355919,3	MCF-7	breast:
6	chr7:140174451..140177169-chr7:140352584..140355463,2	MCF-7	breast:
7	chr7:140217266..140218508-chr7:140352702..140354109,29	MCF-7	breast:
8	chr7:140304917..140305573-chr7:140352877..140353424,2	MCF-7	breast:
9	chr7:140216273..140216881-chr7:140352919..140353865,2	K562	blood:
10	chr7:140175323..140176224-chr7:140353090..140353829,3	MCF-7	breast:
11	chr7:140175272..140176552-chr7:140352943..140353862,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146966	Chromatin interaction
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3371832	chr7:140352483-140356781	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140341800-140355800	Weak transcription	Right Atrium	heart
2	chr7:140347000-140355800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:140349200-140353400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:140349600-140355400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:140349600-140355400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:140351200-140354200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:140351800-140356000	Weak transcription	HMEC	breast
8	chr7:140351800-140356200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:140351800-140358000	Weak transcription	Gastric	stomach
10	chr7:140352000-140356000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:140352400-140353400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:140352800-140353400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr7:140352800-140353600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr7:140353000-140353400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:140353000-140353400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:140353000-140353400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:140353000-140353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:140353000-140353400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:140353000-140353400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:140353000-140353400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr7:140353000-140353400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr7:140353000-140353400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:140353000-140353400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr7:140353000-140353400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:140353000-140353400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:140353000-140353400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:140353000-140353400	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr7:140353000-140353400	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr7:140353000-140353400	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr7:140353000-140353400	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr7:140353000-140353400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr7:140353000-140353400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr7:140353000-140353400	Flanking Active TSS	Colonic Mucosa	Colon
34	chr7:140353000-140353400	Enhancers	Colon Smooth Muscle	Colon
35	chr7:140353000-140353400	Enhancers	Duodenum Mucosa	Duodenum
36	chr7:140353000-140353400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr7:140353000-140353400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr7:140353000-140353400	Enhancers	Fetal Intestine Small	intestine
39	chr7:140353000-140353400	Enhancers	Fetal Kidney	kidney
40	chr7:140353000-140353400	Enhancers	Fetal Lung	lung
41	chr7:140353000-140353400	Enhancers	Left Ventricle	heart
42	chr7:140353000-140353400	Enhancers	Lung	lung
43	chr7:140353000-140353400	Enhancers	Ovary	ovary
44	chr7:140353000-140353400	Enhancers	Pancreas	Pancrea
45	chr7:140353000-140353400	Enhancers	Psoas Muscle	Psoas
46	chr7:140353000-140353400	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr7:140353000-140353400	Enhancers	Right Ventricle	heart
48	chr7:140353000-140353400	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr7:140353000-140353400	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr7:140353000-140353400	Enhancers	Spleen	Spleen

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