Variant report

Variant	rs566671790
Chromosome Location	chr4:149232679-149232680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1019350	chr4:149232430-149282117	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149215200-149232800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:149216800-149238000	Weak transcription	Lung	lung
3	chr4:149227400-149234200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:149227400-149234600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:149231400-149233200	Enhancers	Ovary	ovary
6	chr4:149231400-149233200	Enhancers	Psoas Muscle	Psoas
7	chr4:149231600-149232800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:149231600-149233200	Enhancers	Right Ventricle	heart
9	chr4:149232000-149232800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr4:149232000-149233200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:149232000-149233200	Enhancers	Fetal Heart	heart
12	chr4:149232000-149233200	Enhancers	Gastric	stomach
13	chr4:149232000-149233200	Enhancers	Left Ventricle	heart
14	chr4:149232000-149233200	Enhancers	Pancreas	Pancrea
15	chr4:149232000-149233200	Enhancers	Right Atrium	heart
16	chr4:149232000-149233200	Enhancers	HSMM	muscle
17	chr4:149232000-149233800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:149232000-149234400	Enhancers	Fetal Lung	lung
19	chr4:149232000-149234400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr4:149232200-149233000	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:149232200-149236200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr4:149232400-149232800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:149232400-149233800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr4:149232600-149232800	Enhancers	Small Intestine	intestine
25	chr4:149232600-149233000	Enhancers	Fetal Stomach	stomach
26	chr4:149232600-149233200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:149232600-149233200	Enhancers	Fetal Muscle Leg	muscle

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