Variant report

Variant	rs566674787
Chromosome Location	chr2:40601218-40601219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM178-5	chr2:40599056-40601579	NONHSAT070280

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv873915	chr2:40573350-40615520	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1804767	chr2:40601179-40615520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1805808	chr2:40601179-40615520	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40592400-40605200	Weak transcription	Right Atrium	heart
2	chr2:40592800-40606600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr2:40593400-40607000	Weak transcription	Dnd41	blood
4	chr2:40594200-40605200	Weak transcription	Fetal Brain Female	brain
5	chr2:40595000-40611000	Weak transcription	Right Ventricle	heart
6	chr2:40596000-40601600	Enhancers	Colon Smooth Muscle	Colon
7	chr2:40596400-40601400	Enhancers	Osteobl	bone
8	chr2:40597000-40603400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:40597200-40601400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:40598400-40606600	Weak transcription	Aorta	Aorta
11	chr2:40599200-40608200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:40599200-40609000	Weak transcription	Left Ventricle	heart
13	chr2:40600000-40601800	Weak transcription	Fetal Kidney	kidney
14	chr2:40600000-40605200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:40600400-40606600	Weak transcription	HSMM	muscle
16	chr2:40600600-40602200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr2:40600800-40601400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:40600800-40601400	Enhancers	Psoas Muscle	Psoas
19	chr2:40600800-40609000	Weak transcription	NHDF-Ad	bronchial
20	chr2:40601000-40603800	Weak transcription	Fetal Stomach	stomach
21	chr2:40601000-40605800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:40601000-40621800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:40601200-40602200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:40601200-40603400	Enhancers	Fetal Heart	heart

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