Variant report

Variant	rs56667977
Chromosome Location	chr2:10899087-10899088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10192975	0.86[EUR][1000 genomes]
rs4669620	0.83[EUR][1000 genomes]
rs59051165	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59614694	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10883000-10899400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10892600-10899200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:10892600-10905400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:10896000-10899400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:10896000-10899600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:10896000-10902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:10897400-10902400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:10897600-10899800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:10897800-10906400	Enhancers	Placenta	Placenta
10	chr2:10898000-10899200	Bivalent Enhancer	HepG2	liver
11	chr2:10898000-10899400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:10898200-10899400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr2:10898400-10902800	Weak transcription	Fetal Heart	heart
14	chr2:10898800-10901000	Weak transcription	Esophagus	oesophagus
15	chr2:10899000-10899800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:10899000-10900000	Enhancers	Fetal Intestine Large	intestine
17	chr2:10899000-10901000	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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