Variant report

Variant	rs566683930
Chromosome Location	chr1:76516413-76516414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv947186	chr1:76512447-76530843	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1477	chr1:76515963-76534339	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76514200-76518600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:76514400-76517800	Weak transcription	Fetal Stomach	stomach
3	chr1:76514400-76518600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:76515000-76518600	Weak transcription	Fetal Lung	lung
5	chr1:76515200-76518000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:76515200-76518200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:76515200-76518200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:76515200-76519000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:76515400-76517200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:76515400-76517200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:76515400-76517200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:76515400-76517200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:76515400-76518000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:76515400-76518400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:76515400-76518600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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