Variant report

Variant	rs566689360
Chromosome Location	chr2:30523298-30523299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALK-2	chr2:30523143-30523357	XLOC_002040
2	lnc-ALK-2	chr2:30523143-30523357	XLOC_002040

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv2663	chr2:30522750-30567544	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30496600-30524200	Weak transcription	Right Atrium	heart
2	chr2:30513800-30523400	Weak transcription	Thymus	Thymus
3	chr2:30516800-30524200	Weak transcription	Lung	lung
4	chr2:30518200-30524600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:30522200-30524000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:30522200-30524200	Weak transcription	Primary B cells from cord blood	blood
7	chr2:30522200-30524400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:30522600-30523400	Flanking Active TSS	Fetal Heart	heart
9	chr2:30522600-30523400	Flanking Active TSS	HSMMtube	muscle
10	chr2:30522600-30523600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:30522600-30524400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:30522600-30524400	Weak transcription	Esophagus	oesophagus
13	chr2:30522600-30524600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:30522600-30524600	Enhancers	Rectal Smooth Muscle	rectum
15	chr2:30522600-30524800	Enhancers	Left Ventricle	heart
16	chr2:30522600-30525000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr2:30522600-30525000	Enhancers	Fetal Stomach	stomach
18	chr2:30522600-30525200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:30522600-30525400	Enhancers	NHDF-Ad	bronchial
20	chr2:30522600-30525600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr2:30522600-30525800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:30522800-30523400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr2:30522800-30523600	Enhancers	Right Ventricle	heart
24	chr2:30522800-30524200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:30522800-30524200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr2:30522800-30524600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:30522800-30524600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:30522800-30524600	Enhancers	Ovary	ovary
29	chr2:30522800-30524600	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr2:30522800-30524800	Enhancers	Fetal Lung	lung
31	chr2:30522800-30525000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr2:30522800-30525000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr2:30522800-30525200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr2:30522800-30525200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr2:30522800-30525200	Enhancers	NH-A	brain
36	chr2:30522800-30525800	Enhancers	NHLF	lung
37	chr2:30522800-30526000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:30522800-30526200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:30523000-30523400	Enhancers	Fetal Muscle Trunk	muscle
40	chr2:30523000-30523400	Enhancers	K562	blood
41	chr2:30523000-30523600	Enhancers	Aorta	Aorta
42	chr2:30523000-30523600	Enhancers	Fetal Intestine Large	intestine
43	chr2:30523000-30523800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr2:30523000-30524200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:30523000-30524600	Enhancers	Pancreas	Pancrea
46	chr2:30523000-30525200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:30523000-30525200	Enhancers	Fetal Thymus	thymus
48	chr2:30523000-30526000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr2:30523200-30523600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:30523200-30523600	Flanking Active TSS	Colon Smooth Muscle	Colon

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