Variant report

Variant	rs566690271
Chromosome Location	chr10:5721865-5721866
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:5721632-5721951	MCF10A-Er-Src	breast:	n/a	n/a
2	JUN	chr10:5721706-5721937	HepG2	liver:	n/a	n/a
3	CEBPB	chr10:5721722-5722056	IMR90	lung:	n/a	n/a
4	RAD21	chr10:5721609-5721873	HepG2	liver:	n/a	n/a
5	CTCF	chr10:5721720-5721870	HMEC	breast:	n/a	n/a
6	CTCF	chr10:5721800-5721950	A549	lung:	n/a	n/a
7	FOS	chr10:5721660-5721920	MCF10A-Er-Src	breast:	n/a	n/a
8	JUND	chr10:5721651-5721951	HepG2	liver:	n/a	chr10:5721772-5721783
9	STAT3	chr10:5721609-5721959	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr10:5721850-5722052	A549	lung:	n/a	n/a
11	CTCF	chr10:5721573-5721910	IMR90	lung:	n/a	n/a
12	CTCF	chr10:5721740-5721890	HAc	cerebellar:	n/a	n/a
13	FOSL2	chr10:5721669-5721886	HepG2	liver:	n/a	n/a
14	CTCF	chr10:5721760-5721910	HFF	foreskin:	n/a	n/a
15	RAD21	chr10:5721539-5721949	HepG2	liver:	n/a	n/a
16	RAD21	chr10:5721605-5721865	HepG2	liver:	n/a	n/a
17	STAT3	chr10:5721580-5721936	MCF10A-Er-Src	breast:	n/a	n/a
18	FOXA1	chr10:5721605-5721961	HepG2	liver:	n/a	n/a
19	SMC3	chr10:5721592-5721894	HepG2	liver:	n/a	n/a
20	FOS	chr10:5721630-5721951	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5715613..5722636-chr10:5722933..5730555,14	MCF-7	breast:
2	chr10:5707112..5709350-chr10:5721033..5724526,3	MCF-7	breast:
3	chr10:5719967..5722164-chr10:5733204..5735330,2	K562	blood:
4	chr10:5713284..5716220-chr10:5720012..5722178,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM208B	TF binding region
ENSG00000196372	Chromatin interaction
ENSG00000108021	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1041684	chr10:5665458-5722299	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv2760149	chr10:5665458-5724382	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1054909	chr10:5665458-5724382	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1049620	chr10:5665458-5725208	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv549895	chr10:5712310-5735648	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5720000-5726000	Weak transcription	Thymus	Thymus
2	chr10:5720400-5722200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:5720400-5725800	Weak transcription	Fetal Thymus	thymus
4	chr10:5720600-5723200	Weak transcription	K562	blood
5	chr10:5721200-5722000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:5721400-5722200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:5721800-5722200	Enhancers	NHDF-Ad	bronchial
8	chr10:5721800-5726000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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