Variant report

Variant	rs56672585
Chromosome Location	chr13:110906099-110906100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12428227	0.82[EUR][1000 genomes]
rs12430280	0.82[EUR][1000 genomes]
rs9588125	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3371630	chr13:110904401-110906674	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	inside rSNPs	diseases
4	esv3389428	chr13:110904576-110907324	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3370494	chr13:110905151-110906699	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv3390024	chr13:110906040-110906201	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:110891400-110908600	Weak transcription	Psoas Muscle	Psoas
4	chr13:110894600-110912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110897800-110914200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:110897800-110914800	Weak transcription	Stomach Mucosa	stomach
7	chr13:110899400-110907400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:110899400-110907400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:110900000-110908600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:110900000-110916200	Weak transcription	A549	lung
11	chr13:110900400-110913600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr13:110900600-110913600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:110900800-110907400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr13:110901000-110907400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:110901000-110913600	Weak transcription	Fetal Intestine Large	intestine
16	chr13:110901000-110919400	Weak transcription	Fetal Brain Male	brain
17	chr13:110901400-110906400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:110903000-110914000	Weak transcription	Fetal Intestine Small	intestine
19	chr13:110903200-110906400	Weak transcription	Fetal Lung	lung
20	chr13:110903200-110906400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr13:110903400-110906400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:110903400-110906400	Weak transcription	Fetal Kidney	kidney
23	chr13:110903400-110908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr13:110903600-110906400	Weak transcription	Fetal Stomach	stomach
25	chr13:110903800-110906400	Weak transcription	Colonic Mucosa	Colon
26	chr13:110903800-110906400	Weak transcription	Colon Smooth Muscle	Colon
27	chr13:110903800-110908600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr13:110903800-110911200	Weak transcription	HMEC	breast
29	chr13:110904000-110906400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:110904000-110906400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr13:110904000-110906400	Weak transcription	Aorta	Aorta
32	chr13:110904000-110907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr13:110904200-110906200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:110904200-110906200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:110904200-110906200	Weak transcription	HSMM	muscle
36	chr13:110904200-110906200	Weak transcription	HSMMtube	muscle
37	chr13:110904200-110906400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr13:110904200-110906400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr13:110904200-110906400	Weak transcription	Placenta	Placenta
40	chr13:110904200-110906400	Weak transcription	Ovary	ovary
41	chr13:110904200-110906400	Weak transcription	Right Atrium	heart
42	chr13:110904200-110906400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr13:110904200-110906400	Weak transcription	NH-A	brain
44	chr13:110904200-110906400	Weak transcription	NHDF-Ad	bronchial
45	chr13:110904200-110906600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:110904200-110907200	Weak transcription	Left Ventricle	heart
47	chr13:110904200-110907200	Weak transcription	Spleen	Spleen
48	chr13:110904200-110907400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr13:110904200-110908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr13:110904200-110908800	Weak transcription	Adipose Nuclei	Adipose

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