Variant report

Variant	rs566739
Chromosome Location	chr1:57876496-57876497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10159302	1.00[JPT][hapmap]
rs10493218	1.00[JPT][hapmap]
rs11207023	1.00[JPT][hapmap]
rs11800574	1.00[JPT][hapmap]
rs11803541	1.00[JPT][hapmap]
rs11805025	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11807631	1.00[JPT][hapmap]
rs1424471	1.00[JPT][hapmap]
rs17096836	1.00[JPT][hapmap]
rs17115713	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17115722	1.00[JPT][hapmap]
rs17115739	1.00[JPT][hapmap]
rs17115757	1.00[JPT][hapmap]
rs17115765	1.00[JPT][hapmap]
rs17115767	1.00[JPT][hapmap]
rs17115834	1.00[JPT][hapmap]
rs17115844	1.00[JPT][hapmap]
rs17838097	1.00[JPT][hapmap]
rs3738552	1.00[JPT][hapmap]
rs3850553	1.00[JPT][hapmap]
rs4912243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs507466	1.00[JPT][hapmap]
rs6657926	1.00[JPT][hapmap]
rs7541150	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57873200-57877200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:57873600-57877600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:57874200-57878400	Enhancers	Hela-S3	cervix
5	chr1:57874400-57876800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:57874600-57877000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:57875200-57876800	Weak transcription	HSMMtube	muscle
8	chr1:57875200-57877400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:57875400-57877200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:57875400-57877600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:57875400-57877800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr1:57875600-57877600	Enhancers	Fetal Heart	heart
13	chr1:57876000-57877600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:57876200-57877000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:57876200-57877200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:57876200-57877400	Enhancers	HSMM	muscle
17	chr1:57876200-57878200	Enhancers	Fetal Muscle Leg	muscle
18	chr1:57876200-57883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:57876400-57876800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:57876400-57876800	Weak transcription	Stomach Mucosa	stomach
21	chr1:57876400-57877000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:57876400-57877200	Enhancers	HepG2	liver
23	chr1:57876400-57878200	Weak transcription	Fetal Brain Female	brain
24	chr1:57876400-57880800	Weak transcription	Fetal Brain Male	brain

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