Variant report

Variant	rs56673997
Chromosome Location	chr9:78966812-78966813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7036340	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78948000-78977800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:78954000-78978000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:78958200-78968000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:78964400-78976200	Strong transcription	Fetal Intestine Large	intestine
5	chr9:78964400-78986400	Weak transcription	Colonic Mucosa	Colon
6	chr9:78964800-78970000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr9:78965800-78970800	Strong transcription	Fetal Intestine Small	intestine
8	chr9:78966200-78967400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:78966600-78967600	Enhancers	Placenta	Placenta
10	chr9:78966600-78971800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:78966800-78967200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:78966800-78967400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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