Variant report
| Variant | rs56675368 |
|---|---|
| Chromosome Location | chr2:213479579-213479580 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1482382 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16848925 | 1.00[EUR][1000 genomes] |
| rs16848927 | 1.00[EUR][1000 genomes] |
| rs16848930 | 0.93[EUR][1000 genomes] |
| rs16848933 | 1.00[EUR][1000 genomes] |
| rs16848939 | 1.00[EUR][1000 genomes] |
| rs17330768 | 0.86[AFR][1000 genomes] |
| rs34741122 | 0.85[AFR][1000 genomes] |
| rs58075497 | 1.00[EUR][1000 genomes] |
| rs62186335 | 0.91[AFR][1000 genomes] |
| rs62186339 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs66535530 | 0.85[AFR][1000 genomes] |
| rs6704686 | 1.00[EUR][1000 genomes] |
| rs6748942 | 0.93[EUR][1000 genomes] |
| rs6749215 | 1.00[EUR][1000 genomes] |
| rs73065878 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7563100 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7580977 | 0.91[AFR][1000 genomes] |
| rs7606703 | 0.91[AFR][1000 genomes] |
| rs931215 | 0.80[AFR][1000 genomes] |
| rs931218 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948878 | chr2:213345197-213534298 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:213462600-213483200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
