Variant report

Variant	rs566795214
Chromosome Location	chr11:17306111-17306112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17305212..17308146-chr11:17308901..17311776,2	K562	blood:
2	chr11:17298938..17303193-chr11:17304940..17310347,8	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv1836937	chr11:17291499-17339127	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1799284	chr11:17299390-17343486	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1799280	chr11:17299390-17354775	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1801731	chr11:17299390-17354775	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv524611	chr11:17300844-17316029	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3328825	chr11:17305801-17308549	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17299000-17307200	Weak transcription	Left Ventricle	heart
2	chr11:17299000-17307400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:17299000-17307600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17299000-17307600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:17299000-17307600	Weak transcription	Lung	lung
6	chr11:17299000-17316200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:17299000-17320000	Weak transcription	Esophagus	oesophagus
8	chr11:17299000-17323200	Weak transcription	Ovary	ovary
9	chr11:17299000-17323400	Weak transcription	Aorta	Aorta
10	chr11:17299000-17357200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:17299000-17357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:17299000-17360600	Weak transcription	Small Intestine	intestine
13	chr11:17299200-17307400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:17299200-17307400	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:17299200-17307600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:17299200-17307600	Weak transcription	Psoas Muscle	Psoas
17	chr11:17299200-17307600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:17299200-17307600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:17299200-17310400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:17299200-17317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:17299200-17317800	Weak transcription	Right Ventricle	heart
22	chr11:17299200-17319800	Weak transcription	Fetal Intestine Small	intestine
23	chr11:17299200-17325600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:17299200-17329600	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:17299200-17357000	Weak transcription	Brain Substantia Nigra	brain
26	chr11:17299400-17306200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:17299400-17306400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:17299400-17307200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:17299400-17307400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:17299400-17307400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:17299400-17307400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:17299400-17307600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:17299400-17307600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:17299400-17307600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:17299400-17307600	Weak transcription	NHLF	lung
36	chr11:17299400-17307800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:17299400-17307800	Weak transcription	Fetal Brain Female	brain
38	chr11:17299400-17308000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:17299400-17308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:17299400-17308600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:17299400-17308600	Weak transcription	Brain Germinal Matrix	brain
42	chr11:17299400-17317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:17299400-17317400	Weak transcription	HSMM	muscle
44	chr11:17299400-17318000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:17299400-17318000	Weak transcription	NH-A	brain
46	chr11:17299400-17338200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:17299400-17355400	Weak transcription	Brain Angular Gyrus	brain
48	chr11:17299400-17357000	Weak transcription	Fetal Intestine Large	intestine
49	chr11:17299600-17307600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:17299600-17311000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links