Variant report

Variant	rs566798635
Chromosome Location	chr11:34641912-34641913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:34641759-34642028	GM12891	blood:	n/a	chr11:34641889-34641902 chr11:34641892-34641899 chr11:34641891-34641900

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34640457..34642067-chr11:34645201..34647926,2	K562	blood:
2	chr11:34639668..34642067-chr11:34645120..34646701,2	K562	blood:

Variant related genes	Relation type
EHF	TF binding region
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34625400-34642800	Weak transcription	Gastric	stomach
3	chr11:34634000-34643200	Weak transcription	Lung	lung
4	chr11:34635000-34643400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:34635200-34642000	Weak transcription	Esophagus	oesophagus
6	chr11:34636200-34644000	Enhancers	K562	blood
7	chr11:34637800-34642000	Enhancers	Stomach Mucosa	stomach
8	chr11:34637800-34649200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:34639800-34653800	Weak transcription	Right Atrium	heart
10	chr11:34640000-34643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:34640400-34642000	Enhancers	Pancreas	Pancrea
12	chr11:34640400-34643200	Enhancers	Placenta	Placenta
13	chr11:34641000-34642000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:34641000-34642800	Enhancers	Fetal Intestine Small	intestine
15	chr11:34641000-34643400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:34641200-34642400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:34641400-34642000	Enhancers	NHEK	skin
18	chr11:34641400-34642200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr11:34641600-34642000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:34641600-34642200	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:34641600-34642400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr11:34641600-34642600	Enhancers	HMEC	breast
23	chr11:34641800-34642000	Enhancers	Colonic Mucosa	Colon
24	chr11:34641800-34642000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr11:34641800-34642000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr11:34641800-34642400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr11:34641800-34642800	Enhancers	Fetal Intestine Large	intestine
28	chr11:34641800-34644400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links