Variant report

Variant	rs566827010
Chromosome Location	chr6:56911715-56911716
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62609199..62609722-chr6:56910991..56911946,2	Hela-S3	cervix:
2	chr6:56911241..56911877-chr6:56954515..56955089,3	Hela-S3	cervix:
3	chr20:48789062..48789587-chr6:56911313..56911879,2	Hela-S3	cervix:
4	chr6:56817930..56821539-chr6:56909452..56912838,6	K562	blood:
5	chr6:56910595..56916200-chr6:57035587..57038867,7	K562	blood:
6	chr6:56816669..56821714-chr6:56908406..56912975,10	K562	blood:
7	chr3:23987103..23988093-chr6:56911476..56911991,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000197885	Chromatin interaction
ENSG00000112200	Chromatin interaction
ENSG00000174738	Chromatin interaction
ENSG00000226803	Chromatin interaction
ENSG00000151914	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000112208	Chromatin interaction
ENSG00000151917	Chromatin interaction
ENSG00000231742	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3430228	chr6:56830972-57079281	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1026524	chr6:56902544-56951703	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv970717	chr6:56903957-56955783	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv885913	chr6:56910884-56954439	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56910400-56911800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:56910400-56911800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
3	chr6:56910600-56911800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:56910600-56911800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:56910600-56911800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:56910800-56911800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:56910800-56911800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:56910800-56911800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:56910800-56911800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:56910800-56911800	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:56910800-56911800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:56910800-56911800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:56910800-56911800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:56910800-56911800	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:56910800-56911800	Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr6:56910800-56911800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:56910800-56911800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:56910800-56911800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:56910800-56911800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:56910800-56911800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:56910800-56911800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:56910800-56911800	Active TSS	Adipose Nuclei	Adipose
23	chr6:56910800-56911800	Active TSS	Brain Anterior Caudate	brain
24	chr6:56910800-56911800	Active TSS	Brain Cingulate Gyrus	brain
25	chr6:56910800-56911800	Active TSS	Brain Germinal Matrix	brain
26	chr6:56910800-56911800	Active TSS	Fetal Brain Female	brain
27	chr6:56910800-56911800	Active TSS	Fetal Kidney	kidney
28	chr6:56910800-56911800	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr6:56910800-56911800	Active TSS	Rectal Smooth Muscle	rectum
30	chr6:56910800-56911800	Active TSS	Right Ventricle	heart
31	chr6:56910800-56911800	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr6:56910800-56911800	Active TSS	Thymus	Thymus
33	chr6:56910800-56911800	Active TSS	A549	lung
34	chr6:56910800-56911800	Active TSS	HMEC	breast
35	chr6:56910800-56911800	Active TSS	NHDF-Ad	bronchial
36	chr6:56910800-56911800	Active TSS	NHLF	lung
37	chr6:56911000-56911800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:56911000-56911800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:56911000-56911800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:56911000-56911800	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:56911000-56911800	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr6:56911000-56911800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:56911000-56911800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:56911000-56911800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:56911000-56911800	Active TSS	Primary B cells from peripheral blood	blood
46	chr6:56911000-56911800	Active TSS	Primary T cells fromperipheralblood	blood
47	chr6:56911000-56911800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr6:56911000-56911800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:56911000-56911800	Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:56911000-56911800	Active TSS	Cortex derived primary cultured neurospheres	brain

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