Variant report

Variant	rs566857139
Chromosome Location	chr3:49190449-49190450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49130528..49132725-chr3:49190413..49192087,2	K562	blood:
2	chr3:49189296..49192749-chr3:49200382..49204173,5	K562	blood:
3	chr3:49057515..49059041-chr3:49190402..49192580,2	MCF-7	breast:
4	chr3:49189291..49191828-chr3:49198184..49200998,3	MCF-7	breast:
5	chr3:49189882..49192619-chr3:49194424..49197107,3	MCF-7	breast:
6	chr3:49187904..49189421-chr3:49189725..49191505,2	MCF-7	breast:
7	chr3:49189254..49193305-chr3:49194676..49199783,5	K562	blood:
8	chr3:49188624..49190754-chr3:49194222..49196176,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC71-1	chr3:49190292-49191834	NONHSAT089678

No data

No data

Variant related genes	Relation type
ENSG00000178149	Chromatin interaction
ENSG00000198218	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000270441	Chromatin interaction
ENSG00000177352	Chromatin interaction
ENSG00000199032	Chromatin interaction
ENSG00000207605	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	esv3394931	chr3:49189548-49193146	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49172200-49200400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:49186000-49190800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:49186000-49191200	Weak transcription	Gastric	stomach
4	chr3:49186200-49198800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:49186800-49198800	Weak transcription	Pancreas	Pancrea
6	chr3:49187800-49191200	Weak transcription	Esophagus	oesophagus
7	chr3:49189600-49190600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:49190000-49195400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:49190400-49190600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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