Variant report

Variant	rs566886637
Chromosome Location	chr22:32038226-32038227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32012966-32043914..22:32347255-32351014	K562	blood:
2	22:31936958-31958600..22:32012966-32043914	GM12878	blood:
3	chr22:32025560..32029884-chr22:32035020..32038724,4	MCF-7	breast:
4	22:32012966-32043914..22:32513817-32522138	K562	blood:
5	22:31829733-31836635..22:32012966-32043914	GM12878	blood:
6	22:32012966-32043914..22:32665993-32670527	K562	blood:
7	22:31930706-31935473..22:32012966-32043914	GM12878	blood:
8	22:32012966-32043914..22:32529813-32538538	K562	blood:
9	chr22:32037396..32038993-chr22:32043702..32046288,2	K562	blood:
10	22:32012966-32043914..22:32846948-32860159	K562	blood:
11	22:32012966-32043914..22:32360288-32405313	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232707	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000230866	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000229169	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000234479	Chromatin interaction
ENSG00000240647	Chromatin interaction
ENSG00000239674	Chromatin interaction
ENSG00000224050	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830290	chr22:32011225-32057964	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2493801	chr22:32036635-32039157	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	esv1992499	chr22:32037412-32038996	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	esv3456084	chr22:32037442-32038974	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	esv3456083	chr22:32037494-32038920	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	esv3456085	chr22:32037494-32038920	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32027200-32042400	Weak transcription	A549	lung
2	chr22:32027200-32042600	Weak transcription	Thymus	Thymus
3	chr22:32027200-32043400	Weak transcription	Aorta	Aorta
4	chr22:32027400-32042200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr22:32027400-32042800	Weak transcription	Fetal Lung	lung
6	chr22:32027600-32040600	Weak transcription	Ovary	ovary
7	chr22:32027600-32042000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr22:32027600-32042000	Weak transcription	NH-A	brain
9	chr22:32027600-32042200	Weak transcription	Brain Germinal Matrix	brain
10	chr22:32027600-32043200	Weak transcription	HSMMtube	muscle
11	chr22:32027600-32044800	Weak transcription	Small Intestine	intestine
12	chr22:32027800-32039200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr22:32027800-32040600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr22:32027800-32040600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr22:32027800-32040600	Weak transcription	Primary T cells from cord blood	blood
16	chr22:32027800-32040800	Weak transcription	Fetal Brain Female	brain
17	chr22:32027800-32042000	Weak transcription	HSMM	muscle
18	chr22:32027800-32042200	Weak transcription	Fetal Brain Male	brain
19	chr22:32027800-32042200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr22:32027800-32042400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr22:32027800-32042600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr22:32027800-32042600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr22:32027800-32042800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr22:32027800-32043200	Weak transcription	Colon Smooth Muscle	Colon
25	chr22:32027800-32043800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr22:32028000-32043200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr22:32028200-32039200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr22:32028400-32043200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr22:32030000-32040600	Weak transcription	Dnd41	blood
30	chr22:32031400-32039200	Weak transcription	Hela-S3	cervix
31	chr22:32031800-32040600	Weak transcription	HepG2	liver
32	chr22:32032200-32041800	Weak transcription	HMEC	breast
33	chr22:32032200-32046000	Weak transcription	Pancreas	Pancrea
34	chr22:32032600-32038800	Weak transcription	Liver	Liver
35	chr22:32032600-32039200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr22:32033400-32042000	Strong transcription	Fetal Intestine Small	intestine
37	chr22:32033800-32042800	Weak transcription	Brain Substantia Nigra	brain
38	chr22:32034000-32042000	Weak transcription	K562	blood
39	chr22:32034200-32042600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr22:32034400-32040600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr22:32034400-32040800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr22:32034400-32040800	Weak transcription	Brain Hippocampus Middle	brain
43	chr22:32034400-32040800	Weak transcription	Lung	lung
44	chr22:32034400-32041200	Weak transcription	Brain Anterior Caudate	brain
45	chr22:32034400-32042000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr22:32034400-32042200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr22:32034400-32042600	Weak transcription	Brain Angular Gyrus	brain
48	chr22:32034400-32043000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr22:32034400-32043200	Weak transcription	Gastric	stomach
50	chr22:32034400-32043600	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links