Variant report

Variant	rs566893846
Chromosome Location	chr14:39699328-39699329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:39699204-39699392	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39642562..39645375-chr14:39698449..39701112,2	MCF-7	breast:
2	chr14:39638891..39641141-chr14:39697742..39700523,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258941	TF binding region
MIA2	TF binding region
ENSG00000100941	Chromatin interaction
ENSG00000259083	Chromatin interaction
ENSG00000182400	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv84871	chr14:39698400-39707997	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39696600-39700600	Enhancers	HepG2	liver
3	chr14:39696800-39702400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr14:39697000-39702600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:39697200-39699400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:39697200-39699400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:39697200-39699400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr14:39697200-39699400	Enhancers	NH-A	brain
9	chr14:39697200-39701200	Enhancers	K562	blood
10	chr14:39697400-39699400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr14:39697400-39699400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr14:39697400-39699400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr14:39697600-39699800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:39698200-39702000	Weak transcription	Stomach Mucosa	stomach
15	chr14:39698800-39700800	Weak transcription	A549	lung
16	chr14:39698800-39701000	Weak transcription	Fetal Intestine Large	intestine
17	chr14:39698800-39702200	Weak transcription	Osteobl	bone
18	chr14:39699000-39699800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:39699000-39700600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:39699000-39702200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:39699200-39699800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr14:39699200-39700600	Weak transcription	Fetal Intestine Small	intestine
23	chr14:39699200-39702400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:39699200-39702400	Weak transcription	NHEK	skin

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