Variant report

Variant	rs56691107
Chromosome Location	chr4:28246801-28246802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10011359	0.95[ASN][1000 genomes]
rs10021592	0.95[ASN][1000 genomes]
rs10049536	0.95[ASN][1000 genomes]
rs10433806	0.95[ASN][1000 genomes]
rs10433807	0.95[ASN][1000 genomes]
rs10433842	0.95[ASN][1000 genomes]
rs11932229	0.90[ASN][1000 genomes]
rs11932359	0.96[ASN][1000 genomes]
rs11940328	0.95[ASN][1000 genomes]
rs12641399	0.85[ASN][1000 genomes]
rs12642302	0.80[ASN][1000 genomes]
rs12644493	0.95[ASN][1000 genomes]
rs12646312	0.96[ASN][1000 genomes]
rs12647447	0.85[ASN][1000 genomes]
rs13123999	0.97[ASN][1000 genomes]
rs1353650	0.94[ASN][1000 genomes]
rs1353653	0.90[ASN][1000 genomes]
rs1391219	0.92[ASN][1000 genomes]
rs1497697	0.97[ASN][1000 genomes]
rs1497699	0.95[ASN][1000 genomes]
rs1497701	0.95[ASN][1000 genomes]
rs1497712	0.85[ASN][1000 genomes]
rs1497713	0.85[ASN][1000 genomes]
rs1497716	0.90[ASN][1000 genomes]
rs1497717	0.89[ASN][1000 genomes]
rs16880440	0.85[ASN][1000 genomes]
rs17619774	0.96[ASN][1000 genomes]
rs17619834	0.96[ASN][1000 genomes]
rs17681493	0.96[ASN][1000 genomes]
rs17681723	0.95[ASN][1000 genomes]
rs1846123	0.84[ASN][1000 genomes]
rs1909051	0.85[ASN][1000 genomes]
rs1948610	0.96[ASN][1000 genomes]
rs2036181	0.92[ASN][1000 genomes]
rs2036182	0.92[ASN][1000 genomes]
rs2036183	0.92[ASN][1000 genomes]
rs2309718	0.88[ASN][1000 genomes]
rs2309722	0.93[ASN][1000 genomes]
rs28377207	0.96[ASN][1000 genomes]
rs28393792	0.95[ASN][1000 genomes]
rs28413790	0.96[ASN][1000 genomes]
rs28467171	0.95[ASN][1000 genomes]
rs28491807	0.95[ASN][1000 genomes]
rs28497932	0.96[ASN][1000 genomes]
rs28513496	0.96[ASN][1000 genomes]
rs28683509	0.95[ASN][1000 genomes]
rs28859954	0.95[ASN][1000 genomes]
rs28889732	0.95[ASN][1000 genomes]
rs35621260	0.90[ASN][1000 genomes]
rs3924715	0.91[ASN][1000 genomes]
rs4411974	0.85[ASN][1000 genomes]
rs4435736	0.92[ASN][1000 genomes]
rs4464553	0.97[ASN][1000 genomes]
rs4484281	0.92[ASN][1000 genomes]
rs4616738	0.97[ASN][1000 genomes]
rs4692049	0.95[ASN][1000 genomes]
rs4692050	0.95[ASN][1000 genomes]
rs4692301	0.95[ASN][1000 genomes]
rs4692306	0.92[ASN][1000 genomes]
rs4692307	0.92[ASN][1000 genomes]
rs55869481	0.84[ASN][1000 genomes]
rs57209669	0.92[ASN][1000 genomes]
rs57457365	0.82[ASN][1000 genomes]
rs58122848	0.92[ASN][1000 genomes]
rs58189113	0.92[ASN][1000 genomes]
rs60385254	0.90[ASN][1000 genomes]
rs60551952	0.85[ASN][1000 genomes]
rs60552601	0.92[ASN][1000 genomes]
rs66516862	0.89[ASN][1000 genomes]
rs66538132	0.92[ASN][1000 genomes]
rs66761305	0.82[ASN][1000 genomes]
rs66953666	0.92[ASN][1000 genomes]
rs67049612	0.82[ASN][1000 genomes]
rs67357525	0.85[ASN][1000 genomes]
rs67568650	0.85[ASN][1000 genomes]
rs67575578	0.93[ASN][1000 genomes]
rs67596549	0.93[ASN][1000 genomes]
rs67721098	0.90[ASN][1000 genomes]
rs67773111	0.92[ASN][1000 genomes]
rs67985929	0.89[ASN][1000 genomes]
rs68027003	0.92[ASN][1000 genomes]
rs68152757	0.92[ASN][1000 genomes]
rs6815427	0.96[ASN][1000 genomes]
rs68193608	0.89[ASN][1000 genomes]
rs6830652	0.84[ASN][1000 genomes]
rs6832858	0.96[ASN][1000 genomes]
rs6833026	0.96[ASN][1000 genomes]
rs6839474	0.85[ASN][1000 genomes]
rs6839502	0.84[ASN][1000 genomes]
rs6852577	0.82[ASN][1000 genomes]
rs73221856	0.96[ASN][1000 genomes]
rs73221861	0.95[ASN][1000 genomes]
rs73221862	0.94[ASN][1000 genomes]
rs73221863	0.87[ASN][1000 genomes]
rs73221864	0.88[ASN][1000 genomes]
rs73221867	0.91[ASN][1000 genomes]
rs73221869	0.92[ASN][1000 genomes]
rs73221870	0.92[ASN][1000 genomes]
rs73221871	0.92[ASN][1000 genomes]
rs73221872	0.92[ASN][1000 genomes]
rs73221875	0.85[ASN][1000 genomes]
rs73221879	0.85[ASN][1000 genomes]
rs73221881	0.84[ASN][1000 genomes]
rs73221886	0.85[ASN][1000 genomes]
rs73221887	0.82[ASN][1000 genomes]
rs73221888	0.82[ASN][1000 genomes]
rs73221889	0.82[ASN][1000 genomes]
rs73221892	0.80[ASN][1000 genomes]
rs7436389	0.92[ASN][1000 genomes]
rs7661121	0.97[ASN][1000 genomes]
rs7686001	0.94[ASN][1000 genomes]
rs7698910	0.96[ASN][1000 genomes]
rs924236	0.92[ASN][1000 genomes]
rs924237	0.92[ASN][1000 genomes]
rs924238	0.92[ASN][1000 genomes]
rs924239	0.92[ASN][1000 genomes]
rs924240	0.92[ASN][1000 genomes]
rs964693	0.97[ASN][1000 genomes]
rs964694	0.97[ASN][1000 genomes]
rs964695	0.97[ASN][1000 genomes]
rs996281	0.92[ASN][1000 genomes]
rs996282	0.92[ASN][1000 genomes]
rs9997640	0.96[ASN][1000 genomes]
rs9999649	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878774	chr4:28153349-28254938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878776	chr4:28208093-28267024	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878777	chr4:28208093-28343903	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878778	chr4:28237783-28343903	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28235000-28279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28241200-28248600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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