Variant report

Variant	rs56691878
Chromosome Location	chr6:34329185-34329186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34214022..34216940-chr6:34327441..34329391,2	K562	blood:

Variant related genes	Relation type
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57642915	0.84[AFR][1000 genomes]
rs58678278	0.84[AFR][1000 genomes]
rs7738665	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
3	chr6:34308800-34330800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:34309600-34329200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:34309800-34329800	Weak transcription	Fetal Thymus	thymus
6	chr6:34309800-34330800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:34309800-34337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:34310000-34330600	Weak transcription	Dnd41	blood
10	chr6:34310400-34329200	Weak transcription	Brain Angular Gyrus	brain
11	chr6:34310800-34330800	Weak transcription	Primary T cells from cord blood	blood
12	chr6:34315400-34351200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:34316200-34333400	Weak transcription	Placenta	Placenta
14	chr6:34317400-34330800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:34318200-34330600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
17	chr6:34318400-34330000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:34318600-34330600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:34318800-34330600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:34320200-34330800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:34320400-34330400	Weak transcription	Aorta	Aorta
22	chr6:34320400-34330800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:34320400-34330800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:34320400-34333400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:34320400-34350400	Weak transcription	Esophagus	oesophagus
26	chr6:34320600-34330600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:34320600-34331000	Weak transcription	Small Intestine	intestine
28	chr6:34322200-34333600	Weak transcription	Lung	lung
29	chr6:34324200-34330600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:34325400-34331000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:34325600-34330600	Enhancers	Fetal Heart	heart
32	chr6:34325800-34329200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr6:34325800-34329200	Enhancers	NHDF-Ad	bronchial
34	chr6:34325800-34329800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:34325800-34330600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:34326000-34329200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:34326400-34329200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:34326400-34331600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:34326600-34330600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:34326600-34330800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:34327000-34351600	Weak transcription	Ovary	ovary
42	chr6:34327200-34329600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:34327600-34330600	Weak transcription	Brain Substantia Nigra	brain
44	chr6:34327600-34332400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:34327600-34342200	Weak transcription	Fetal Kidney	kidney
46	chr6:34327800-34330400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:34327800-34330600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:34327800-34330600	Weak transcription	Liver	Liver
49	chr6:34327800-34330600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:34327800-34330600	Weak transcription	Colon Smooth Muscle	Colon

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