Variant report

Variant	rs56692233
Chromosome Location	chr11:106031358-106031359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73539693	1.00[AFR][1000 genomes]
rs73543518	1.00[AFR][1000 genomes]
rs73545558	1.00[AFR][1000 genomes]
rs73545581	1.00[AFR][1000 genomes]
rs73545591	1.00[AFR][1000 genomes]
rs73545597	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106027600-106032800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:106030600-106031400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:106030600-106031400	Enhancers	Esophagus	oesophagus
4	chr11:106030600-106033200	ZNF genes & repeats	Dnd41	blood
5	chr11:106031000-106031400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:106031000-106031400	Enhancers	NHLF	lung
7	chr11:106031200-106031400	Enhancers	Colon Smooth Muscle	Colon
8	chr11:106031200-106031600	Active TSS	A549	lung
9	chr11:106031200-106031600	Active TSS	HepG2	liver
10	chr11:106031200-106031600	Active TSS	Osteobl	bone
11	chr11:106031200-106031800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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