Variant report

Variant	rs566936491
Chromosome Location	chr6:67920511-67920512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:67920274-67920794	MCF-7	breast:	n/a	n/a
2	TEAD4	chr6:67920367-67920726	K562	blood:	n/a	n/a
3	FOS	chr6:67920301-67920719	MCF10A-Er-Src	breast:	n/a	n/a
4	GATA3	chr6:67920070-67920966	MCF-7	breast:	n/a	n/a
5	GATA3	chr6:67920404-67920832	MCF-7	breast:	n/a	n/a
6	FOSL2	chr6:67920355-67920697	MCF-7	breast:	n/a	n/a
7	STAT3	chr6:67920429-67920631	MCF10A-Er-Src	breast:	n/a	chr6:67920466-67920474
8	CEBPB	chr6:67920391-67920737	K562	blood:	n/a	chr6:67920577-67920588
9	CEBPB	chr6:67920378-67920734	MCF-7	breast:	n/a	chr6:67920577-67920588
10	FOS	chr6:67920361-67920718	MCF10A-Er-Src	breast:	n/a	n/a
11	JUND	chr6:67920272-67920779	MCF-7	breast:	n/a	n/a
12	ZNF217	chr6:67920305-67920755	MCF-7	breast:	n/a	n/a
13	CEBPB	chr6:67920391-67920705	K562	blood:	n/a	chr6:67920577-67920588
14	TCF12	chr6:67920256-67920967	MCF-7	breast:	n/a	n/a
15	FOS	chr6:67920355-67920710	MCF10A-Er-Src	breast:	n/a	n/a
16	MYC	chr6:67920356-67920744	MCF10A-Er-Src	breast:	n/a	n/a
17	TCF7L2	chr6:67920237-67920742	MCF-7	breast:	n/a	chr6:67920366-67920380
18	SIN3AK20	chr6:67920273-67920853	MCF-7	breast:	n/a	n/a
19	FOS	chr6:67920362-67920710	MCF10A-Er-Src	breast:	n/a	n/a
20	STAT3	chr6:67920308-67920556	MCF10A-Er-Src	breast:	n/a	chr6:67920466-67920474
21	CEBPB	chr6:67920409-67920731	HepG2	liver:	n/a	chr6:67920577-67920588
22	TCF12	chr6:67920122-67920869	MCF-7	breast:	n/a	n/a
23	NR2F2	chr6:67920275-67920773	MCF-7	breast:	n/a	n/a
24	FOXM1	chr6:67920156-67920877	MCF-7	breast:	n/a	n/a
25	TEAD4	chr6:67920364-67920686	K562	blood:	n/a	n/a
26	CEBPB	chr6:67920300-67920776	MCF-7	breast:	n/a	chr6:67920577-67920588
27	TEAD4	chr6:67920274-67920778	MCF-7	breast:	n/a	n/a
28	GATA3	chr6:67920266-67920797	MCF-7	breast:	n/a	n/a
29	EP300	chr6:67920109-67920839	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000212229	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886070	chr6:67488983-68094791	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886085	chr6:67702591-68140783	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023350	chr6:67703437-67955122	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv538291	chr6:67703437-67955122	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv463140	chr6:67704821-67977326	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv603585	chr6:67704821-67977326	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3418797	chr6:67772134-68314069	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1027923	chr6:67830533-68828337	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv1016471	chr6:67854363-68708368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv538292	chr6:67854363-68708368	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv886094	chr6:67895080-67963392	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3451797	chr6:67912280-67945520	Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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