Variant report

Variant	rs56693922
Chromosome Location	chr6:44523835-44523836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73734116	0.88[AFR][1000 genomes]
rs73734118	0.92[AFR][1000 genomes]
rs73737007	0.92[AFR][1000 genomes]
rs73737008	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528484	chr6:44520451-44524173	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2421801	chr6:44523033-44524483	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv516165	chr6:44523591-44524173	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv527194	chr6:44523591-44534397	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44520600-44526600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:44523000-44531000	Weak transcription	Ovary	ovary
3	chr6:44523200-44526200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:44523600-44524600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:44523800-44524000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:44523800-44524000	Enhancers	Gastric	stomach
7	chr6:44523800-44524000	Enhancers	Pancreas	Pancrea
8	chr6:44523800-44524200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:44523800-44527200	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:44523800-44527600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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