Variant report

Variant	rs566953549
Chromosome Location	chr1:179098223-179098224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179097711..179098293-chr1:179162847..179163421,2	MCF-7	breast:
2	chr1:179097406..179100383-chr1:179127242..179129431,2	MCF-7	breast:
3	chr1:179075971..179079448-chr1:179095385..179098448,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012667	chr1:179094571-179120280	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002253	chr1:179094571-179120938	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1001191	chr1:179097246-179120938	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179063200-179112000	Weak transcription	Fetal Kidney	kidney
2	chr1:179079600-179109800	Weak transcription	Small Intestine	intestine
3	chr1:179080000-179098600	Weak transcription	Esophagus	oesophagus
4	chr1:179080200-179101600	Weak transcription	Fetal Brain Male	brain
5	chr1:179080400-179103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:179080800-179098400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:179080800-179099000	Weak transcription	Colonic Mucosa	Colon
8	chr1:179080800-179099000	Weak transcription	Spleen	Spleen
9	chr1:179086600-179105000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:179086800-179099000	Weak transcription	Right Ventricle	heart
11	chr1:179087800-179113000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:179088000-179098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:179088000-179098600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:179088000-179099000	Weak transcription	Aorta	Aorta
15	chr1:179088200-179098800	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:179088200-179102400	Weak transcription	Brain Germinal Matrix	brain
17	chr1:179088400-179099200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:179088400-179099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:179088600-179098800	Weak transcription	Ovary	ovary
20	chr1:179088600-179098800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:179089200-179098400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr1:179089200-179099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr1:179089400-179098400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr1:179089400-179098400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr1:179089600-179099000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:179090800-179098400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr1:179090800-179099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:179090800-179104400	Weak transcription	Fetal Brain Female	brain
29	chr1:179091000-179098400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:179091000-179098400	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:179091000-179098400	Weak transcription	GM12878-XiMat	blood
32	chr1:179091000-179098600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:179091000-179098800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr1:179091000-179098800	Weak transcription	Brain Angular Gyrus	brain
35	chr1:179091000-179098800	Weak transcription	Thymus	Thymus
36	chr1:179091000-179108800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:179091000-179109000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:179091000-179109200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr1:179093400-179117200	Weak transcription	Fetal Stomach	stomach
40	chr1:179093600-179098400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:179093600-179099000	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr1:179093800-179098800	Genic enhancers	HSMM	muscle
43	chr1:179093800-179098800	Genic enhancers	NHDF-Ad	bronchial
44	chr1:179093800-179099000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:179093800-179099600	Genic enhancers	HMEC	breast
46	chr1:179094000-179099600	Genic enhancers	Osteobl	bone
47	chr1:179094400-179099600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:179094600-179098800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr1:179095000-179098400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:179095200-179099800	Genic enhancers	NHEK	skin

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