Variant report

Variant	rs566963941
Chromosome Location	chr6:117803853-117803854
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:117802655..117804398-chr6:117864844..117866459,3	MCF-7	breast:
2	chr6:117802549..117804711-chr6:117824121..117828201,5	K562	blood:
3	chr6:117803575..117805462-chr6:117921337..117926516,4	K562	blood:
4	chr6:101327181..101330084-chr6:117801293..117803939,2	K562	blood:
5	chr6:117803211..117805462-chr6:117921337..117926538,8	K562	blood:
6	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:
7	chr6:117802223..117804604-chr6:117922456..117924196,2	MCF-7	breast:
8	chr6:117803267..117806417-chr6:117823935..117828011,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112249	Chromatin interaction
ENSG00000260000	Chromatin interaction
ENSG00000047932	Chromatin interaction
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3434198	chr6:117802809-117805457	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117802400-117806400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:117802600-117804000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:117802600-117804800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr6:117802600-117805000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr6:117802800-117804400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:117802800-117804800	Active TSS	Brain Hippocampus Middle	brain
7	chr6:117802800-117804800	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr6:117802800-117805000	Active TSS	Gastric	stomach
9	chr6:117802800-117805200	Active TSS	Rectal Smooth Muscle	rectum
10	chr6:117802800-117805600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:117803000-117805000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:117803000-117805000	Active TSS	Brain Substantia Nigra	brain
13	chr6:117803000-117805600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:117803200-117804200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:117803200-117804600	Bivalent/Poised TSS	Fetal Stomach	stomach
16	chr6:117803200-117804800	Active TSS	Colon Smooth Muscle	Colon
17	chr6:117803200-117805000	Active TSS	Brain Cingulate Gyrus	brain
18	chr6:117803200-117805200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:117803200-117805200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:117803200-117805200	Active TSS	Fetal Intestine Large	intestine
21	chr6:117803200-117805600	Active TSS	Psoas Muscle	Psoas
22	chr6:117803200-117805600	Active TSS	NHDF-Ad	bronchial
23	chr6:117803200-117806000	Active TSS	NHLF	lung
24	chr6:117803200-117806200	Active TSS	HSMMtube	muscle
25	chr6:117803400-117804400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:117803400-117804400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:117803400-117804400	Flanking Bivalent TSS/Enh	Thymus	Thymus
28	chr6:117803400-117804800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:117803400-117804800	Active TSS	Brain Angular Gyrus	brain
30	chr6:117803400-117805000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr6:117803400-117805000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:117803400-117805000	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr6:117803400-117805000	Active TSS	Fetal Kidney	kidney
34	chr6:117803400-117805200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:117803400-117805200	Active TSS	H9 Cell Line	embryonic stem cell
36	chr6:117803400-117805200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:117803400-117805200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:117803400-117805200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:117803400-117805200	Active TSS	Esophagus	oesophagus
40	chr6:117803400-117805200	Active TSS	Lung	lung
41	chr6:117803400-117805200	Active TSS	Ovary	ovary
42	chr6:117803400-117805200	Active TSS	Placenta Amnion	Placenta Amnion
43	chr6:117803400-117805200	Active TSS	Small Intestine	intestine
44	chr6:117803400-117805200	Active TSS	NHEK	skin
45	chr6:117803400-117805400	Active TSS	Aorta	Aorta
46	chr6:117803400-117805400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:117803400-117805600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:117803400-117805600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:117803400-117805800	Active TSS	Hela-S3	cervix
50	chr6:117803400-117805800	Active TSS	HSMM	muscle

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