Variant report

Variant	rs56697214
Chromosome Location	chr11:34949930-34949931
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34948905..34951586-chr11:35371482..35373998,2	MCF-7	breast:
2	chr11:34948963..34950630-chr11:34950747..34953143,2	K562	blood:
3	chr11:34943666..34945334-chr11:34948612..34950173,2	MCF-7	breast:
4	chr11:34948435..34950390-chr11:35072380..35075148,2	K562	blood:
5	chr11:34947961..34950134-chr11:34950392..34952887,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2757436	chr11:34913315-34963728	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759817	chr11:34913315-34963728	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
5	esv2754010	chr11:34940724-35001024	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1055116	chr11:34940737-34962291	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv437715	chr11:34941494-34951993	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv437716	chr11:34948586-34950196	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34938800-34951400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:34938800-34957400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:34938800-34990400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:34939000-34950600	Weak transcription	Gastric	stomach
5	chr11:34939200-34950000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:34939200-34950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:34939200-34952200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:34939200-34952800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:34939200-34953000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:34939200-34953400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:34939200-34956000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:34939200-35000000	Weak transcription	Thymus	Thymus
13	chr11:34939400-34952800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:34939400-34953200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:34939400-34953400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:34939600-34950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:34939600-34962600	Weak transcription	Right Ventricle	heart
18	chr11:34939800-34950800	Weak transcription	Pancreas	Pancrea
19	chr11:34939800-34951200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:34939800-34951400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:34939800-34953800	Weak transcription	Placenta	Placenta
22	chr11:34939800-34960400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:34940000-34950800	Weak transcription	Right Atrium	heart
24	chr11:34940000-34954000	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:34940000-34959200	Weak transcription	Fetal Brain Male	brain
26	chr11:34940000-34963800	Weak transcription	Spleen	Spleen
27	chr11:34940200-34950000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:34940200-34954000	Weak transcription	Primary T cells from cord blood	blood
29	chr11:34940200-34970400	Weak transcription	Left Ventricle	heart
30	chr11:34940200-34984800	Weak transcription	Fetal Stomach	stomach
31	chr11:34940400-34950200	Weak transcription	Small Intestine	intestine
32	chr11:34940400-34954000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:34940400-34957000	Weak transcription	Brain Germinal Matrix	brain
34	chr11:34940400-34959200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:34940400-34959400	Weak transcription	Fetal Brain Female	brain
36	chr11:34940400-34962600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:34940600-34953800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:34940600-34954000	Weak transcription	Dnd41	blood
39	chr11:34940600-34957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:34940800-34957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:34942600-34954000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:34942600-34955000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:34943000-34951200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:34943000-34951400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:34943800-34952600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:34943800-34961600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:34944000-34950600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:34944000-34951200	Enhancers	HepG2	liver
49	chr11:34944000-34955000	Weak transcription	Fetal Intestine Large	intestine
50	chr11:34944200-34950800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links