Variant report

Variant	rs566978211
Chromosome Location	chr11:73680559-73680560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:73680557-73680790	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr11:73679479-73686782	K562	blood:	n/a	n/a
3	POLR2A	chr11:73680396-73687250	GM12892	blood:	n/a	n/a
4	POLR2A	chr11:73680325-73680635	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:73678522-73695046	PBDE	blood:	n/a	n/a
6	POLR2A	chr11:73679749-73686894	GM12891	blood:	n/a	n/a
7	POLR2A	chr11:73679760-73685825	GM12878	blood:	n/a	n/a
8	POLR2A	chr11:73680188-73681669	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr11:73679570-73684863	K562	blood:	n/a	n/a
10	POLR2A	chr11:73680518-73681699	HL-60	blood:	n/a	n/a
11	POLR2A	chr11:73679439-73686847	GM18505	blood:	n/a	n/a
12	POLR2A	chr11:73680168-73680595	GM12878	blood:	n/a	n/a
13	POLR2A	chr11:73680078-73681824	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr11:73680091-73681869	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr11:73680216-73681835	GM12878	blood:	n/a	n/a
16	MTA3	chr11:73680507-73681807	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:73680194-73681847	GM19099	blood:	n/a	n/a
18	POLR2A	chr11:73680153-73680658	GM12878	blood:	n/a	n/a
19	POLR2A	chr11:73680400-73684752	GM19193	blood:	n/a	n/a
20	POLR2A	chr11:73679017-73681824	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73679655..73681254-chr11:73938042..73940266,2	MCF-7	breast:
2	chr11:73679005..73682645-chr11:73778281..73782136,5	MCF-7	breast:
3	chr11:73679561..73684546-chr11:73778723..73783416,5	MCF-7	breast:
4	chr11:73678390..73681142-chr11:73802316..73803896,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255847	TF binding region
ENSG00000168014	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv1827060	chr11:73670645-73694754	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1001380	chr11:73680052-73684451	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73669000-73685800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:73669800-73681000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:73672800-73684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:73672800-73684800	Weak transcription	HSMM	muscle
5	chr11:73672800-73693200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:73674000-73685000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:73674600-73684200	Weak transcription	Right Atrium	heart
8	chr11:73675200-73684400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr11:73675200-73685400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:73675400-73692600	Weak transcription	Psoas Muscle	Psoas
11	chr11:73675800-73681200	Weak transcription	Dnd41	blood
12	chr11:73675800-73683800	Weak transcription	GM12878-XiMat	blood
13	chr11:73675800-73685400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:73675800-73685400	Weak transcription	Fetal Brain Female	brain
15	chr11:73676000-73681000	Weak transcription	Thymus	Thymus
16	chr11:73676000-73684200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:73676000-73684200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:73676000-73684400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr11:73676000-73685000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:73676000-73685400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:73676000-73685600	Weak transcription	HepG2	liver
22	chr11:73676000-73686000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:73676000-73686200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:73676000-73686200	Weak transcription	Brain Substantia Nigra	brain
25	chr11:73676000-73686400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:73676000-73687400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:73676200-73680800	Weak transcription	K562	blood
28	chr11:73676200-73681200	Weak transcription	Stomach Mucosa	stomach
29	chr11:73676200-73682600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:73676200-73685000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:73676200-73685000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:73676200-73685200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:73676200-73685400	Weak transcription	Brain Anterior Caudate	brain
34	chr11:73676200-73687600	Weak transcription	Brain Angular Gyrus	brain
35	chr11:73676400-73681000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:73676400-73685400	Weak transcription	Hela-S3	cervix
37	chr11:73676400-73685800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:73676400-73693200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:73676600-73680800	Weak transcription	HSMMtube	muscle
40	chr11:73676600-73682400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:73676600-73684600	Weak transcription	A549	lung
42	chr11:73676600-73684800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:73676600-73685200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:73676600-73685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:73676600-73685600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:73676600-73691000	Weak transcription	Fetal Heart	heart
47	chr11:73678200-73685200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr11:73678200-73685200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr11:73678600-73682200	Enhancers	Primary T cells from cord blood	blood
50	chr11:73678600-73685000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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