Variant report

Variant	rs567045371
Chromosome Location	chr3:22423245-22423246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:61)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:61 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:22422972-22424003	GM12892	blood:	n/a	n/a
2	POLR2A	chr3:22423127-22423331	PANC-1	pancreas:	n/a	n/a
3	TAF1	chr3:22423142-22423398	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr3:22423082-22423390	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr3:22423178-22423296	A549	lung:	n/a	n/a
6	HEY1	chr3:22423108-22423473	K562	blood:	n/a	n/a
7	TAF1	chr3:22423159-22423379	Hela-S3	cervix:	n/a	n/a
8	POU2F2	chr3:22423122-22423913	GM12878	blood:	n/a	n/a
9	TAF1	chr3:22423160-22423360	GM12891	blood:	n/a	n/a
10	TAF1	chr3:22423026-22423436	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr3:22423140-22423938	GM12891	blood:	n/a	n/a
12	POLR2A	chr3:22423179-22423293	HepG2	liver:	n/a	n/a
13	POLR2A	chr3:22423031-22423275	GM12878	blood:	n/a	n/a
14	HEY1	chr3:22423128-22423390	HepG2	liver:	n/a	n/a
15	POLR2A	chr3:22422962-22423417	MCF-7	breast:	n/a	n/a
16	POLR2A	chr3:22422960-22423487	GM12891	blood:	n/a	n/a
17	POLR2A	chr3:22423167-22423305	SK-N-SH	brain:	n/a	n/a
18	POLR2A	chr3:22423131-22423466	PFSK-1	brain:	n/a	n/a
19	HEY1	chr3:22423055-22423431	K562	blood:	n/a	n/a
20	POLR2A	chr3:22422957-22423437	MCF-7	breast:	n/a	n/a
21	POLR2A	chr3:22423152-22423394	A549	lung:	n/a	n/a
22	POLR2A	chr3:22423170-22423376	GM12878	blood:	n/a	n/a
23	POLR2A	chr3:22423144-22423931	GM12878	blood:	n/a	n/a
24	POLR2A	chr3:22422987-22423385	HUVEC	blood vessel:	n/a	n/a
25	POLR2A	chr3:22422947-22424489	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr3:22422998-22423773	GM12891	blood:	n/a	n/a
27	POLR2A	chr3:22423156-22423419	H1-hESC	embryonic stem cell:	n/a	n/a
28	TAF1	chr3:22423146-22423354	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr3:22423087-22423372	HepG2	liver:	n/a	n/a
30	POLR2A	chr3:22423231-22423261	MCF10A-Er-Src	breast:	n/a	n/a
31	POLR2A	chr3:22423054-22423275	A549	lung:	n/a	n/a
32	POLR2A	chr3:22423163-22423316	HepG2	liver:	n/a	n/a
33	POLR2A	chr3:22423058-22423409	HepG2	liver:	n/a	n/a
34	POLR2A	chr3:22423036-22423487	ProgFib	skin:	n/a	n/a
35	POLR2A	chr3:22422961-22423444	MCF-7	breast:	n/a	n/a
36	POLR2A	chr3:22422997-22423346	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr3:22423110-22423819	GM12878	blood:	n/a	n/a
38	POLR2A	chr3:22423090-22423451	SK-N-MC	brain:	n/a	n/a
39	POLR2A	chr3:22422988-22423349	Gliobla	brain:	n/a	n/a
40	POLR2A	chr3:22423071-22423298	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr3:22422993-22423397	K562	blood:	n/a	n/a
42	POLR2A	chr3:22423172-22423341	HepG2	liver:	n/a	n/a
43	POLR2A	chr3:22423142-22423937	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr3:22423228-22423431	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr3:22423024-22423503	Hela-S3	cervix:	n/a	n/a
46	TCF3	chr3:22423183-22423310	GM12878	blood:	n/a	n/a
47	POLR2A	chr3:22423091-22424012	GM12892	blood:	n/a	n/a
48	POLR2A	chr3:22423160-22423390	Hela-S3	cervix:	n/a	n/a
49	ZBTB33	chr3:22423125-22423958	K562	blood:	n/a	n/a
50	POLR2A	chr3:22423188-22423301	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
HMGB1P5	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432404	chr3:22000296-22433396	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv965148	chr3:22421613-22424357	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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