Variant report

Variant	rs56705977
Chromosome Location	chr17:19779974-19779975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1585751	1.00[EUR][1000 genomes]
rs16960503	1.00[EUR][1000 genomes]
rs28632080	1.00[EUR][1000 genomes]
rs28661916	1.00[EUR][1000 genomes]
rs3744692	1.00[EUR][1000 genomes]
rs3744694	1.00[EUR][1000 genomes]
rs3760488	1.00[EUR][1000 genomes]
rs3786037	1.00[EUR][1000 genomes]
rs4646783	1.00[EUR][1000 genomes]
rs56407718	1.00[EUR][1000 genomes]
rs7216958	1.00[EUR][1000 genomes]
rs8066134	1.00[EUR][1000 genomes]
rs8068565	1.00[EUR][1000 genomes]
rs9890667	1.00[EUR][1000 genomes]
rs9893138	1.00[EUR][1000 genomes]
rs9894723	1.00[EUR][1000 genomes]
rs9899365	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1057469	chr17:19696714-19787062	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2763158	chr17:19777544-19789227	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19771600-19787000	Weak transcription	Gastric	stomach
2	chr17:19771800-19780000	Weak transcription	Pancreas	Pancrea
3	chr17:19776000-19782200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr17:19778600-19780000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr17:19778600-19780000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr17:19778600-19780000	Enhancers	Fetal Thymus	thymus
7	chr17:19778600-19783200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr17:19778800-19780000	Enhancers	Primary T cells from cord blood	blood
9	chr17:19778800-19780000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr17:19778800-19780000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr17:19778800-19780000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:19778800-19781800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:19778800-19782000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:19778800-19782400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:19778800-19783400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:19779000-19781200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr17:19779000-19782200	Enhancers	Primary hematopoietic stem cells	blood
18	chr17:19779200-19780000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:19779200-19780000	Enhancers	Dnd41	blood
20	chr17:19779200-19780400	Enhancers	Spleen	Spleen
21	chr17:19779200-19780800	Enhancers	Primary B cells from cord blood	blood
22	chr17:19779200-19781200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr17:19779200-19781200	Enhancers	Thymus	Thymus
24	chr17:19779400-19780400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr17:19779400-19780600	Weak transcription	Brain Hippocampus Middle	brain
26	chr17:19779600-19780200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
27	chr17:19779800-19780400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr17:19779800-19780600	Enhancers	Primary B cells from peripheral blood	blood
29	chr17:19779800-19780800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr17:19779800-19780800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr17:19779800-19781200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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