Variant report

Variant	rs56706346
Chromosome Location	chr9:118156784-118156785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73516421	0.81[AFR][1000 genomes]
rs73551174	0.92[AFR][1000 genomes]
rs73551196	0.92[AFR][1000 genomes]
rs73554815	0.89[AFR][1000 genomes]
rs73568836	0.85[AFR][1000 genomes]
rs7872358	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2761552	chr9:118113846-118157488	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118150000-118158000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:118154200-118157600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:118154600-118161800	Weak transcription	Fetal Kidney	kidney
4	chr9:118154800-118159800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:118155800-118158200	Enhancers	Adipose Nuclei	Adipose
6	chr9:118155800-118159000	Enhancers	NHDF-Ad	bronchial
7	chr9:118155800-118159400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:118155800-118159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:118156000-118156800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:118156000-118157600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:118156200-118159000	Enhancers	NHEK	skin
12	chr9:118156200-118159200	Enhancers	HMEC	breast
13	chr9:118156400-118157000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:118156400-118157400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:118156600-118157200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:118156600-118157400	Enhancers	NH-A	brain
17	chr9:118156600-118158000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:118156600-118159200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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