Variant report

Variant	rs567065003
Chromosome Location	chr1:211686589-211686590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211556040..211557948-chr1:211686154..211688879,2	K562	blood:
2	chr1:211432929..211435006-chr1:211685831..211687394,2	K562	blood:
3	chr1:211433037..211435006-chr1:211684827..211687394,2	K562	blood:
4	chr1:211679953..211682698-chr1:211686016..211688389,2	K562	blood:
5	chr1:211686187..211688121-chr1:211747912..211750697,2	K562	blood:

Variant related genes	Relation type
ENSG00000153363	Chromatin interaction
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1826724	chr1:211684336-211694508	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv19010	chr1:211686460-211687052	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211659200-211687600	Weak transcription	Spleen	Spleen
2	chr1:211682400-211687200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:211682400-211687200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:211683800-211686800	Weak transcription	A549	lung
5	chr1:211683800-211687000	Weak transcription	K562	blood
6	chr1:211684400-211687000	Weak transcription	Hela-S3	cervix
7	chr1:211684600-211688800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:211684800-211688600	Enhancers	HMEC	breast
9	chr1:211685000-211687000	Weak transcription	Osteobl	bone
10	chr1:211685000-211687200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:211685400-211687800	Weak transcription	Thymus	Thymus
12	chr1:211685800-211687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:211685800-211687200	Weak transcription	NH-A	brain
14	chr1:211686000-211690800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:211686200-211687000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:211686200-211687800	Weak transcription	HUVEC	blood vessel
17	chr1:211686400-211686600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:211686400-211686600	Enhancers	Gastric	stomach
19	chr1:211686400-211686800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:211686400-211687800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:211686400-211688200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links