Variant report

Variant	rs56711593
Chromosome Location	chr15:34477896-34477897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34477710..34479818-chr15:34502145..34504954,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10152545	1.00[AMR][1000 genomes]
rs56833597	1.00[AMR][1000 genomes]
rs57938352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59654806	1.00[AMR][1000 genomes]
rs59947156	1.00[AMR][1000 genomes]
rs9972582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34454200-34497800	Weak transcription	Osteobl	bone
2	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
3	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
6	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:34466600-34482800	Weak transcription	NHDF-Ad	bronchial
8	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:34467200-34478400	Weak transcription	Lung	lung
10	chr15:34467200-34491400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:34467400-34486200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:34468000-34478400	Weak transcription	Dnd41	blood
14	chr15:34468000-34496400	Weak transcription	Fetal Lung	lung
15	chr15:34468000-34497800	Weak transcription	NHEK	skin
16	chr15:34468200-34478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:34468200-34485800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:34468200-34498000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:34468600-34480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:34471000-34501000	Weak transcription	Aorta	Aorta
21	chr15:34471400-34481000	Weak transcription	Brain Angular Gyrus	brain
22	chr15:34471600-34500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:34473000-34480600	Weak transcription	Brain Anterior Caudate	brain
24	chr15:34473400-34500400	Weak transcription	HSMMtube	muscle
25	chr15:34474000-34478000	Weak transcription	GM12878-XiMat	blood
26	chr15:34475000-34500400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:34475400-34478200	Enhancers	Placenta	Placenta
28	chr15:34475400-34483200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr15:34475400-34491600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:34475600-34478000	Weak transcription	K562	blood
31	chr15:34475600-34478200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:34475600-34478400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:34475600-34478400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:34475600-34478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:34475600-34478400	Weak transcription	Esophagus	oesophagus
36	chr15:34475600-34478400	Weak transcription	Gastric	stomach
37	chr15:34475600-34478400	Weak transcription	Left Ventricle	heart
38	chr15:34475600-34478400	Weak transcription	Right Ventricle	heart
39	chr15:34475600-34478600	Weak transcription	Pancreas	Pancrea
40	chr15:34475600-34482400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr15:34475600-34491800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:34475600-34493600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:34475600-34495600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:34475600-34499800	Weak transcription	Ovary	ovary
45	chr15:34475600-34500000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:34475600-34500400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:34475600-34500400	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:34475600-34500400	Weak transcription	HUVEC	blood vessel
49	chr15:34475800-34480800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:34475800-34482600	Weak transcription	A549	lung

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