Variant report

Variant	rs567121944
Chromosome Location	chr15:74006843-74006844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74006471..74009141-chr15:74023643..74026024,2	MCF-7	breast:
2	chr15:74006337..74009234-chr15:74010683..74012522,2	K562	blood:
3	chr15:74005160..74008724-chr15:74017261..74021043,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf60-2	chr15:74005275-74006855	NONHSAT047153

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
2	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
3	chr15:73990200-74007200	Weak transcription	Stomach Mucosa	stomach
4	chr15:73990200-74007600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73990400-74007200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73990400-74007600	Strong transcription	Fetal Stomach	stomach
7	chr15:73990600-74007400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
9	chr15:73990800-74009200	Weak transcription	Psoas Muscle	Psoas
10	chr15:73991400-74007200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:73992200-74007400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:73992600-74007400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:73993000-74007400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:73993200-74007000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:73993400-74007800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:73993600-74007400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:73993600-74007400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:73993600-74007600	Strong transcription	Fetal Brain Female	brain
19	chr15:73993600-74008000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:73993800-74007400	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:73994000-74007200	Strong transcription	Brain Germinal Matrix	brain
22	chr15:73994200-74007200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:73994400-74007400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:73994600-74007400	Strong transcription	Adipose Nuclei	Adipose
25	chr15:73994800-74007200	Strong transcription	Placenta Amnion	Placenta Amnion
26	chr15:73995200-74007200	Strong transcription	Placenta	Placenta
27	chr15:73996800-74007200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:73997000-74007200	Strong transcription	HSMMtube	muscle
29	chr15:73997400-74007200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:73997600-74007400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:73997600-74007600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr15:73997800-74007400	Strong transcription	Fetal Muscle Leg	muscle
33	chr15:73999200-74007400	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:74001200-74007000	Weak transcription	Hela-S3	cervix
35	chr15:74002400-74007000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:74002400-74008800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:74002600-74007200	Strong transcription	Fetal Intestine Large	intestine
38	chr15:74002800-74007600	Strong transcription	Fetal Intestine Small	intestine
39	chr15:74003000-74007400	Weak transcription	Fetal Heart	heart
40	chr15:74003200-74015400	Weak transcription	Fetal Kidney	kidney
41	chr15:74003800-74008600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:74004000-74007800	Weak transcription	HUVEC	blood vessel
43	chr15:74004000-74010000	Weak transcription	Brain Angular Gyrus	brain
44	chr15:74004000-74015400	Weak transcription	Fetal Lung	lung
45	chr15:74004200-74009800	Weak transcription	NHDF-Ad	bronchial
46	chr15:74004200-74011800	Weak transcription	Brain Substantia Nigra	brain
47	chr15:74004600-74007400	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr15:74005000-74007200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:74005000-74007200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr15:74005000-74007200	Strong transcription	Osteobl	bone

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