Variant report

Variant	rs567149812
Chromosome Location	chr12:29701396-29701397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv469190	chr12:29612425-29811471	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv557917	chr12:29612425-29811471	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1053629	chr12:29680163-29826626	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv983497	chr12:29696128-29702801	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv3418558	chr12:29700985-29703033	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29665400-29725400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:29668800-29706000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:29668800-29716600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:29673600-29708800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:29688200-29705400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:29691000-29705800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr12:29691200-29709200	Weak transcription	HMEC	breast
8	chr12:29693000-29705600	Weak transcription	Hela-S3	cervix
9	chr12:29696400-29706000	Weak transcription	Aorta	Aorta
10	chr12:29696600-29705600	Weak transcription	Osteobl	bone
11	chr12:29697200-29701400	Enhancers	Fetal Muscle Leg	muscle
12	chr12:29697400-29701400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr12:29698000-29701400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:29698200-29712600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:29699200-29701600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:29699400-29704800	Weak transcription	Spleen	Spleen
17	chr12:29699400-29709600	Weak transcription	Left Ventricle	heart
18	chr12:29699400-29715800	Weak transcription	Right Ventricle	heart
19	chr12:29699800-29708800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:29700000-29712000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr12:29700200-29712200	Weak transcription	Ovary	ovary
22	chr12:29700400-29701600	Enhancers	Psoas Muscle	Psoas
23	chr12:29700400-29712000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:29700400-29719000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr12:29700400-29734000	Weak transcription	Brain Anterior Caudate	brain
26	chr12:29700600-29708800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:29700600-29711400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr12:29700800-29701400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
29	chr12:29700800-29705800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:29700800-29707400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:29700800-29709000	Weak transcription	HSMM	muscle
32	chr12:29700800-29709600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr12:29701000-29704800	Weak transcription	Fetal Kidney	kidney
34	chr12:29701000-29705600	Weak transcription	Liver	Liver
35	chr12:29701000-29705800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr12:29701000-29709400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:29701000-29714200	Weak transcription	HSMMtube	muscle
38	chr12:29701200-29701600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr12:29701200-29705600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr12:29701200-29705800	Weak transcription	Adipose Nuclei	Adipose
41	chr12:29701200-29714400	Weak transcription	NHDF-Ad	bronchial
42	chr12:29701200-29714400	Weak transcription	NHLF	lung
43	chr12:29701200-29715200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr12:29701200-29715600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links