Variant report

Variant	rs567159162
Chromosome Location	chr1:180887298-180887299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180885638..180890175-chr1:180892218..180894358,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv872579	chr1:180881148-180931508	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1001918	chr1:180886750-180908005	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180882400-180894600	Weak transcription	Pancreas	Pancrea
2	chr1:180882600-180894000	Weak transcription	Brain Substantia Nigra	brain
3	chr1:180882800-180887400	Weak transcription	Gastric	stomach
4	chr1:180882800-180888000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:180882800-180889400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:180882800-180891200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:180882800-180892600	Weak transcription	Esophagus	oesophagus
8	chr1:180882800-180894400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:180883000-180891200	Weak transcription	Fetal Brain Female	brain
10	chr1:180883000-180891600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:180883000-180892200	Weak transcription	Brain Germinal Matrix	brain
12	chr1:180883000-180894600	Weak transcription	Right Ventricle	heart
13	chr1:180883000-180894800	Weak transcription	Colonic Mucosa	Colon
14	chr1:180883200-180892200	Weak transcription	Right Atrium	heart
15	chr1:180883200-180894200	Weak transcription	Brain Angular Gyrus	brain
16	chr1:180883400-180887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:180883400-180892600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:180883600-180887600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:180883600-180888600	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:180883600-180891800	Weak transcription	HSMM	muscle
21	chr1:180883600-180892000	Weak transcription	Fetal Heart	heart
22	chr1:180883600-180892200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:180883600-180894200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:180883600-180894200	Weak transcription	Fetal Lung	lung
25	chr1:180883600-180894800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:180883600-180895000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:180885200-180887400	Weak transcription	K562	blood
28	chr1:180885200-180891000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:180885400-180887600	Strong transcription	Osteobl	bone
30	chr1:180885400-180888200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:180885400-180889600	Genic enhancers	Fetal Muscle Trunk	muscle
32	chr1:180885400-180891200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:180885600-180887800	Strong transcription	Adipose Nuclei	Adipose
34	chr1:180885600-180887800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:180885600-180888200	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr1:180885600-180888400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:180885600-180888400	Strong transcription	Aorta	Aorta
38	chr1:180885600-180889600	Strong transcription	Fetal Intestine Small	intestine
39	chr1:180885800-180887600	Strong transcription	Lung	lung
40	chr1:180885800-180887800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:180885800-180889600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:180885800-180895000	Weak transcription	NHLF	lung
43	chr1:180886000-180887800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:180886000-180887800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:180886000-180887800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:180886000-180888400	Strong transcription	Brain Anterior Caudate	brain
47	chr1:180886000-180889600	Genic enhancers	Fetal Muscle Leg	muscle
48	chr1:180886000-180889800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:180886000-180911000	Enhancers	Fetal Thymus	thymus
50	chr1:180886400-180890000	Enhancers	Thymus	Thymus

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