Variant report

Variant	rs567168209
Chromosome Location	chr6:78047838-78047839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1024795	chr6:78028751-78076926	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1018131	chr6:78031037-78076926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1015358	chr6:78033996-78066871	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	esv3444593	chr6:78047369-78047985	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	esv3423691	chr6:78047444-78047872	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3381554	chr6:78047454-78047965	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	esv3510418	chr6:78047455-78047954	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
14	esv3510420	chr6:78047455-78047954	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78044000-78051200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:78044200-78051200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:78044200-78078200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:78044400-78051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:78044400-78051200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:78045000-78049400	Weak transcription	HUVEC	blood vessel
7	chr6:78045200-78049000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:78045400-78050200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:78045600-78050200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:78045800-78050000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:78046200-78049800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:78046600-78049800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:78046800-78048000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:78047200-78048800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:78047400-78049000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:78047600-78049600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:78047600-78049800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:78047800-78051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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