Variant report

Variant	rs567229898
Chromosome Location	chr15:74045705-74045706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74045574-74045930	H1-neurons	neurons:	n/a	n/a
2	MAX	chr15:74045546-74045921	A549	lung:	n/a	n/a
3	POLR2A	chr15:74045646-74045901	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAZ	chr15:74044597-74046256	IMR90	lung:	n/a	chr15:74044619-74044629 chr15:74044615-74044625
5	POLR2A	chr15:74045033-74045901	H1-neurons	neurons:	n/a	n/a
6	POLR2A	chr15:74045605-74045720	Gliobla	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:74045705-74045755	RPTEC	kidney:	n/a
2	chr15:74045705-74045755	GM12892	blood:	n/a
3	chr15:74045705-74045755	AG04450	lung:	fetal
4	chr15:74045705-74045755	LNCaP	prostate:	n/a
5	chr15:74045705-74045755	ECC-1	luminal epithelium:	n/a
6	chr15:74045705-74045755	SAEC	small airway:	n/a
7	chr15:74045705-74045755	GM19239	blood:	n/a
8	chr15:74045705-74045755	HRPEpiC	eye:	n/a
9	chr15:74045705-74045755	GM12891	blood:	n/a
10	chr15:74045705-74045755	AG09309	skin:	n/a
11	chr15:74045705-74045755	MCF10A-Er-Src	breast:	n/a
12	chr15:74045705-74045755	BE2_C	brain:	n/a
13	chr15:74045705-74045755	HCT-116	colon:	n/a
14	chr15:74045705-74045755	Caco-2	colon:	n/a
15	chr15:74045705-74045755	HIPEpiC	eye:	n/a
16	chr15:74045705-74045755	AG09319	gingival:	n/a
17	chr15:74045705-74045755	HCM	heart:	n/a
18	chr15:74045705-74045755	HCF	heart:	n/a
19	chr15:74045705-74045755	Hela-S3	cervix:	n/a
20	chr15:74045705-74045755	HCPEpiC	choroid plexus:	n/a
21	chr15:74045705-74045755	HRCEpiC	kidney:	n/a
22	chr15:74045705-74045755	GM12878	blood:	n/a
23	chr15:74045705-74045755	U87	brain:	n/a
24	chr15:74045705-74045755	A549	lung:	n/a
25	chr15:74045705-74045755	HAEpiC	amniotic membrane:	n/a
26	chr15:74045705-74045755	Hepatocyte	liver:	n/a
27	chr15:74045705-74045755	HEK293	kidney:	embryo
28	chr15:74045705-74045755	Jurkat	blood:	n/a
29	chr15:74045705-74045755	HEEpiC	esophagus:	n/a
30	chr15:74045705-74045755	PANC-1	pancreas:	n/a
31	chr15:74045705-74045755	HRE	kidney:	n/a
32	chr15:74045705-74045755	HUVEC	blood vessel:	n/a
33	chr15:74045705-74045755	H1-hESC	embryonic stem cell:	embryo
34	chr15:74045705-74045755	NHDF-neo	bronchial:	n/a
35	chr15:74045705-74045755	SK-N-SH_RA	brain:	n/a
36	chr15:74045705-74045755	IMR90	lung:	fetal
37	chr15:74045705-74045755	T-47D	breast:	n/a
38	chr15:74045705-74045755	AG10803	skin:	n/a
39	chr15:74045705-74045755	HepG2	liver:	n/a
40	chr15:74045705-74045755	SK-N-MC	brain:	n/a
41	chr15:74045705-74045755	SK-N-SH	brain:	n/a
42	chr15:74045705-74045755	HNPCEpiC	eye:	n/a
43	chr15:74045705-74045755	AG04449	skin:	fetal
44	chr15:74045705-74045755	MCF-7	breast:	n/a
45	chr15:74045705-74045755	AoSMC	blood vessel:	n/a
46	chr15:74045705-74045755	HPAEpiC	pulmonary alveolar:	n/a
47	chr15:74045705-74045755	K562	blood:	n/a
48	chr15:74045705-74045755	ProgFib	skin:	n/a
49	chr15:74045705-74045755	NB4	blood:	n/a
50	chr15:74045705-74045755	CMK	blood:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf59-2	chr15:74045697-74046276	NONHSAT047155

No data

Variant related genes	Relation type
C15orf59	TF binding region
C15orf59	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3421437	chr15:74043924-74046872	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv9813	chr15:74044169-74048692	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv13877	chr15:74044459-74046147	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3418540	chr15:74044749-74046697	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74043200-74046000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:74043600-74045800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr15:74043600-74046000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:74043800-74045800	Active TSS	Right Atrium	heart
5	chr15:74043800-74046000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:74044000-74045800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr15:74044000-74045800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74044000-74045800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:74044000-74045800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr15:74044000-74046000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:74044000-74046000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr15:74044000-74046000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:74044000-74046000	Active TSS	Brain Germinal Matrix	brain
14	chr15:74044000-74046000	Active TSS	Fetal Brain Female	brain
15	chr15:74044200-74045800	Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr15:74044200-74045800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:74044200-74045800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr15:74044200-74045800	Weak transcription	Fetal Brain Male	brain
19	chr15:74044200-74045800	Bivalent/Poised TSS	Fetal Stomach	stomach
20	chr15:74044200-74045800	Active TSS	Left Ventricle	heart
21	chr15:74044200-74045800	Active TSS	Rectal Smooth Muscle	rectum
22	chr15:74044200-74046000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
23	chr15:74044200-74046000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:74044200-74046000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:74044200-74046000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr15:74044200-74046000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:74044400-74045800	Active TSS	Aorta	Aorta
28	chr15:74044400-74046000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:74044400-74046000	Active TSS	Ovary	ovary
30	chr15:74044400-74046000	Active TSS	Psoas Muscle	Psoas
31	chr15:74044600-74045800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:74044600-74045800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:74044600-74045800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:74044600-74045800	Bivalent/Poised TSS	Osteobl	bone
35	chr15:74044600-74046000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
36	chr15:74044800-74045800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:74044800-74045800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
38	chr15:74044800-74045800	Active TSS	Lung	lung
39	chr15:74044800-74045800	Active TSS	HSMM	muscle
40	chr15:74044800-74046000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:74044800-74046000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
42	chr15:74044800-74046200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr15:74045000-74045800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:74045000-74045800	Active TSS	Adipose Nuclei	Adipose
45	chr15:74045000-74045800	Bivalent/Poised TSS	Colonic Mucosa	Colon
46	chr15:74045000-74046200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:74045200-74045800	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr15:74045200-74045800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:74045200-74045800	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:74045200-74045800	Active TSS	Esophagus	oesophagus

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